Camelia, the Perl 6 bug

IRC log for #cdk, 2009-01-13

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All times shown according to UTC.

Time Nick Message
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14:48 CIA-61 cdk: shk3 * r13868 /cdk/trunk/src/main/org/openscience/cdk/​modeling/builder3d/ModelBuilder3D.java: removed an unused private method which is in ringsetmanipulator anyway
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16:28 rguha hi, is jchempaint trunk the current dev version? I get a build failure
16:29 maclean joined #cdk
16:30 maclean rguha : think so. what is the build failure?
16:30 maclean That is, what is the error?
16:30 rguha [javac] /home/rguha/src/java/jchempaint/tru​nk/src/main/org/openscience/jchempa​int/action/CleanupAction.java:78: cannot find symbol
16:30 rguha [javac] symbol  : method cleanup()
16:30 rguha [javac] location: interface org.openscience.cdk.controller.IChemModelRelay
16:30 rguha [javac]         hub.cleanup();
16:30 rguha and many many more
16:31 maclean huh.
16:31 maclean shk3 : what do you think?
16:32 shk3 sorry, not listening
16:32 shk3 mom
16:32 zarah grandpa!
16:32 rguha is jchempaint built against cdk 1.2.x? or against cdk trunk? The problem I'm facing is that cdk 1.2.x does not depict heteroatoms  -I wanted to see what jchempaint was doing
16:32 shk3 jchempaint is against a branch
16:33 maclean Not heteroatoms?! As in "NOSP.."?
16:33 shk3 called jchempaint-primary
16:34 shk3 much new stuff in chemmodelrelay etc.
16:34 shk3 so you need to check out this branch
16:34 rguha http://rguha.ath.cx/~rguha/cic​c/rest/depict/c1ccccc1CCOCC#N
16:34 zarah rguha's link is also http://tinyurl.com/9vp43w
16:35 rguha whereis jchempaint-primary? I don't see it in the CDK SF repo?
16:35 maclean ahhh. that explains why your smiles depiction wasn't working for me earlier today :)
16:35 rguha yes, I had ot update the service for other stuff and now the depiction is broken :(
16:36 maclean cdk/branches/jcp-primary
16:36 rguha aah!
16:36 shk3 see http://cdk.svn.sourceforge.net/viewvc​/cdk/cdk/branches/jchempaint-primary/
16:36 zarah shk3's link is also http://tinyurl.com/7uhm5n
16:37 rguha thanks - didn't relaize it was a cdk branch
16:39 shk3 no prob
16:44 rguha how does one get a runnable jchempaint jar file?
16:44 shk3 ant dist
16:44 shk3 in the jchempaint project
16:45 shk3 make sure you have a proper ant.properties file
16:45 shk3 then you should get a jchempaint jar in dist
16:45 rguha so I checkedout jchempaint-primary and then did ant dist - says there's no target
16:46 shk3 not in jchempaint-primary
16:46 shk3 but in org.openscience.cdk.jchempaint
16:48 rguha ok got it, thanks
16:49 shk3 comments on new jcp wellcome
16:49 maclean is it alright if I edit the help docs for jcp (I am already doing it, but wonder if it is a good idea :)
16:50 shk3 it is
16:50 shk3 these need updating
16:51 maclean I'm just fixing spelling/grammar for now, but some parts will need complete re-writes.
16:51 shk3 yes
16:51 maclean (for the core changes)
16:51 shk3 I tried to find out about undo-redo in eclipse rcp
16:51 shk3 not much luck till now
16:51 shk3 but will do this next
16:51 maclean oh. okay.
16:52 rguha so jcp depicts a SMILE fine - how much has jchempaint-primary diverged from 1.2.x (assuming that was where it was branched from)? Any plans to merge it back to 1.2.x?
16:52 shk3 merge back - sure
16:52 shk3 as soon as we do a jcp release
16:53 rguha is there a timeframe?
16:53 shk3 diversion is large in components like renderer, controller etc.
16:53 shk3 no
16:53 shk3 lots of details left to do
16:53 rguha aah ok
16:54 rguha any chance that the just the renderer could be merged back (ifi it's not dependent on other stuff like the controller etc)?
16:55 shk3 we could merge back jchempaint-primary before jcp is finished, in theory
16:55 shk3 but developing jcp will probably change things in there further
16:55 rguha well the depiction service gets used in a number of places and having it working in 1.2.x would be very useful
16:56 maclean JCP has been a good test suite for regression bugs - that is, loss of previous (essential!) functionality :/
16:56 maclean Such as zooming...
16:56 shk3 rguha: i agree
16:57 shk3 but 1.2.x is already a branch in itself
16:57 shk3 so this looks like chaos
16:57 rguha well, as far as I understand, no dev is going on on trunk
16:58 rguha at one point 1.2.x goes into trunk
16:58 rguha uptil that point, if you branched from 1.2.x, merging back into 1.2.x seems OK
16:59 shk3 I am confused with all the branches
16:59 shk3 sorry
16:59 rguha ha! so am I :)
16:59 rguha there are a number of branches scheduled for merge after review that need to be done - it'd clear things up
17:04 shk3 is there a way to mark branches as merger or so?
17:05 shk3 ie. if going to http://cdk.svn.sourceforge.n​et/viewvc/cdk/cdk/branches/
17:05 zarah shk3's link is also http://tinyurl.com/7cuvk4
17:05 shk3 it would be great to see merged=finished ones
17:06 rguha hmm, such labels would be nice, but I don't think are available
17:07 rguha one could put something like [MERGED] into the commit message, but that would dissapear after the next commit
17:08 shk3 but new commit means it needs a new merge
17:08 shk3 or at least something is going on in the branch
17:08 shk3 so that would be an option
17:09 rguha right, not a bad idea
17:12 shk3 will suggest on mailing list
17:16 rguha thanks
17:26 CIA-61 cdk: gilleain * r13869 /jchempaint/trunk/src/main/org/openscience/​jchempaint/resources/userhelp_jcp/contain/ (17 files): Tidying of the help docs.
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18:09 CIA-61 cdk: shk3 * r13870 /cdk/branches/shk3-cleanup/README: [ABANDONED] since it was done accidentially (changes are in cleanuptests branch as well)
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