Camelia, the Perl 6 bug

IRC log for #cdk, 2009-01-16

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All times shown according to UTC.

Time Nick Message
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08:39 jpansanel moin
08:39 zarah hi jpansanel
08:39 egonw hi jpansanel
08:40 jpansanel hi egonw
08:55 jonalv joined #cdk
09:02 carsten joined #cdk
09:13 jpansanel moin jonalv
09:13 jpansanel moin carsten
09:14 jonalv o/
09:14 jpansanel carsten: I'll release Chemical Structures next week
09:14 carsten that is cool, then I will immediatly update our package in the school
09:15 jpansanel the new release contains also the chinese translations
09:16 carsten well, that doesn't matter to me :)
09:16 carsten does it also contain more molecules?
09:16 jpansanel yes it will contain more molecules
09:17 jpansanel the list is not fixed
09:17 carsten is there a list of whice molecules you added?
09:18 jpansanel not now
09:18 jpansanel do you have any request ?
09:19 * carsten opens the page
09:20 carsten Sugars is what we are currently interested in
09:21 jpansanel There are some sugars (carbohydrates)
09:21 jpansanel in linear forms
09:22 carsten 2008-12-10: a traditional chinese version of Chemical-Structre is online; many thanks to I-Yuan Chiang !
09:23 carsten so that is "old news" :)
09:24 carsten mmh, D-(+)-*ose and  D-(-)-*ose         <--- do they have different structures? Yes, they do, right?
09:28 jpansanel I think it's diffent when they are cyclic
09:28 jpansanel you have the alpha and beta forms
09:29 jpansanel however, there's only one linear form
09:29 jpansanel hum
09:29 carsten jpansanel: how, esters are missing
09:30 jpansanel I did not find any 'D-+-ribose)
09:30 carsten no, I was blind
09:30 carsten sorry
09:30 jpansanel but only D-(-)-ribose and L-(+)-ribose
09:32 carsten jpansanel: I asked three chemistry teachers, friends of mine
09:32 carsten they will look over the database and tell me what they are missing :)
09:33 jpansanel cool
09:33 carsten jpansanel: what is the svn URL again?
09:34 jpansanel svn co https://blueobelisk.svn.sourceforge.ne​t/svnroot/blueobelisk/structures/trunk structures
09:36 carsten git pull upstream master
09:36 carsten ^^^ I love git ;)
09:36 carsten jpansanel: Avogadro switched to git
09:43 jpansanel héhé
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10:06 egonw carsten: is KDE going too?
10:45 * carsten hopes we will but I doubt we will do so in 2009
10:45 carsten to many issues with git :(
10:46 carsten egonw: there is a mailinglist for the change, there git, bzr, hg and monotone are being discussed
10:46 carsten already 2 years (!) ago Thiago managed to import all of KDE into Git
10:46 carsten http://mail.kde.org/pipermail/kde-scm-interest/
10:47 zarah carsten's link is also http://tinyurl.com/8bpojh
10:48 carsten egonw: Git really rocks! For example I just commited this: http://github.com/cniehaus/avogadro/commit​/8c1c5b7d569c3f6884cf14febe7fd3bfbc29382e
10:48 zarah carsten's link is also http://tinyurl.com/8ck39k
10:48 carsten I hope that Marcus will merge that. Marcus is our Linus :-)
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16:05 CIA-68 cdk: goglepox * r13885 /cdk/branches/jchempaint-primary/src/main/org/op​enscience/cdk/renderer/AbstractFontManager.java:
16:05 CIA-68 cdk: Changed AbstractFontManager to use TreeMap instead of HashMap.
16:05 CIA-68 cdk: Changed to scaleToFontSizeMap to use Map interface
16:05 CIA-68 cdk: and font scale test to be inclusive.
16:56 CIA-68 cdk: egonw * r13886 /cdk/branches/cdk-1.2.x/sr​c/META-INF/sdg.datafiles: Added missing .datafiles for the SDG 2D templates
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18:59 CIA-68 cdk: egonw * r13887 /cdk-xws/trunk/xws-cdk-client/src/org/openscienc​e/cdk/xws/client/CDKXWSExampleAsyncClient.java: Test with proper CML
18:59 CIA-68 cdk: egonw * r13888 /cdk-xws/trunk/xws-cdk-services/src/org/opensci​ence/cdk/xws/services/SomeCDKFunctionTwo.java: Better feedback, and fixed CML namespace
19:19 CIA-68 cdk: egonw * r13889 /cdk/branches/cdk-1.2.x/src/main/org/opens​cience/cdk/fingerprint/Fingerprinter.java: [jonalv-fingerprint-1.2.x] first optimization brings down fingerprinting time to about 62.5% of what it was before
19:20 CIA-68 cdk: egonw * r13890 /cdk/branches/cdk-1.2.x/src/main/org/opens​cience/cdk/fingerprint/Fingerprinter.java: [jonalv-fingerprint-1.2.x] first optimization brings down fingerprinting time to about 58.5% of what it was in the beginning
19:20 CIA-68 cdk: egonw * r13891 /cdk/branches/cdk-1.2.x/src/main/org/opens​cience/cdk/fingerprint/Fingerprinter.java: [jonalv-fingerprint-1.2.x] third optimization brings down fingerprinting time to about 57.6% of what it was in the beginning
19:21 CIA-68 cdk: egonw * r13892 /cdk/branches/cdk-1.2.x/src/main/org/opens​cience/cdk/fingerprint/Fingerprinter.java: [jonalv-fingerprint-1.2.x] fourth optimization brings down fingerprinting time to about 55.1% of what it was in the beginning
19:22 CIA-68 cdk: egonw * r13893 /cdk/branches/cdk-1.2.x/src/main/org/opens​cience/cdk/fingerprint/Fingerprinter.java: [jonalv-fingerprint-1.2.x] this optimization brings down fingerprinting time to about 53.3% of what it was in the beginning. (removed an extra call to StringBuffer.toString)
19:22 CIA-68 cdk: egonw * r13894 /cdk/branches/cdk-1.2.x/src/main/org/opens​cience/cdk/fingerprint/Fingerprinter.java: [jonalv-fingerprint-1.2.x] fix for error in last commit
20:16 CIA-68 cdk: egonw * r13895 /cdk/branches/cdk-1.2.x/src/ (3 files in 3 dirs): Added the charge-separated S.inyl atom type
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20:52 CIA-68 cdk: egonw * r13896 /cdk/branches/cdk-1.2.x/src/ (3 files in 3 dirs): Added the charge-separated P.ate atom type
21:12 CIA-68 cdk: egonw * r13897 /cdk/branches/cdk-1.2.x/src/test/org/openscie​nce/cdk/atomtype/CDKAtomTypeMatcherTest.java: Added a unit test for a failing atom type perception in XLogPDescriptorTest... works here :(
21:27 CIA-68 cdk: egonw * r13898 /cdk/branches/cdk-1.2.x/src/test/org/open​science/cdk/smiles/SmilesParserTest.java: Added unit test for bug #2514200
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