Camelia, the Perl 6 bug

IRC log for #cdk, 2009-02-13

| Channels | #cdk index | Today | | Search | Google Search | Plain-Text | summary

All times shown according to UTC.

Time Nick Message
07:07 egonw joined #cdk
07:22 carsten joined #cdk
07:24 CIA-62 cdk: egonw * r14176 /cdk/branches/jchempaint-primary/.classpath: No OS/X specific JRE
07:25 CIA-62 cdk: egonw * r14177 /cdk/branches/jchempaint-primary/src​/main/org/openscience/cdk/renderer/g​enerators/HighlightGenerator.java: Applied the oval bond highlight rendering patch from BC2
08:15 Gpox joined #cdk
08:28 timvdm joined #cdk
08:49 steinbeck joined #cdk
08:49 steinbeck moin
09:27 egonw jpansane1: ping
09:27 olass joined #cdk
09:27 olass hi
09:28 egonw jpansane1: not sure if you are around... but we will distribute your BO structude db with bioclipse again...
09:28 egonw jpansane1: any thing we should keep in mind
09:33 egonw jpansane1: http://pansanel.blogspot.com/2008/01​/chemical-structures-release-21.html
09:33 zarah egonw's link is also http://tinyurl.com/agzjve
09:33 egonw 2.1 is not the newest, is it?
09:38 olass jpansane1: please email me/egon if/when there is a new version and I'll update the Bioclispe plugin
09:38 olass for now I will include 2.1
09:42 egonw jpansane1: have you considered putting in all drugs in the data set?
09:42 egonw jpansane1: as 2D or 3D... there is drug bank, but that is not Open Data...
10:12 olass jpansane1: I would sugegst separating the chemical structures molecules from the HTML presentation
10:12 olass now things are mixed
10:12 olass well, just a suggestion
10:37 egonw oh, crap, now I forgot to ask Chris how the party was yesterday :(
10:53 olass party?
10:55 egonw yeah, Thomas Kuhn had his PhD defense yesterday
10:55 egonw so, should be dr. T. Kuhn now
10:58 egonw OK, time for a nasty hack...
11:06 * egonw loves nasty hacks...
11:06 egonw it's like synthesizing weird cyclopropane hacks
11:13 egonw yes, cool :)
11:48 * olass dislikes nasty hacks
11:48 olass hacks should be nice
11:48 olass nasty hacks typically do something you are not allowed to do...
11:54 egonw orignally:
11:54 egonw hacks are things the platform was not designed to do...
11:54 jonalv joined #cdk
11:54 egonw like a lock: open to unautorized persons :)
11:54 egonw but also: have a XOM serializer not output a XML declaration...
11:55 egonw that's perfectly allowed...
11:55 egonw but still a hack
11:55 egonw a hack is like a workaround
11:55 egonw but then cooler
11:55 egonw not necessarily bad...
11:55 egonw but bad is what people remember
12:31 olass sure, but a nasty hack?
12:31 olass that must be bad
12:31 olass (sounds bad IMO)
13:36 maclean joined #cdk
14:47 jpansane1 moin
14:47 jpansane1 hi olass
14:48 olass hi jpansanel
14:48 egonw hi jpansanel!
14:48 jpansanel olass : I saw you message about Bioclipse and Chem Structure
14:48 olass yes
14:49 olass just a suggestion :-)
14:49 jpansanel a new version is planned for February, however the main change is a chinese translation
14:49 * olass is releasing bioclipse2-beta2 as we speak
14:49 olass ok
14:50 jpansanel It does not impact the data into Bioclipse
14:53 jpansanel olass : do you need a simple version without html files ?
14:53 jpansanel only cml or mol files ?
14:54 jpansanel or a big sdf file ?
15:01 olass i like a version with only cml and mol
15:01 olass egon constructed one from it now
15:01 jpansanel ok
15:02 jpansanel do you want the mol and cml classified by chemical group ?
15:17 CIA-62 blueobelisk: pansanel * r268 /structures/trunk/ (5 files in 5 dirs): Fix some xml issues
15:22 olass jpansanel: do as you like, I have no preference
15:22 olass egonw: do you?
15:24 egonw jpansanel: no prefs there either
15:24 egonw jpansanel: full coverage of drug space would be nice, though
15:24 egonw jpansanel: not sure how many you have right now...
15:45 jpansanel egonw : I have to work on drug ...
15:45 jpansanel It's a good feature request ;)
19:43 maclean joined #cdk
19:46 CIA-62 cdk: gilleain * r14178 /cdk/branches/jchempaint-primary/ (19 files in 4 dirs): Moved the RendererModel from the generators to being a parameter of the generate method. This avoids the problem of non-shared instances, and stale rendering options.
19:48 CIA-62 cdk: gilleain * r14179 /jchempaint/trunk/src/main/org/opens​cience/jchempaint/RenderPanel.java: Moved to a Renderer that has to be initialised with generators.
20:35 CIA-62 cdk: gilleain * r14180 /cdk/branches/jchempaint-primary/src​/main/org/openscience/cdk/renderer/ (Renderer.java RendererModel.java RenderingParameters.java): Synchronised with bioclipse cdk-externals.
23:58 edrin joined #cdk

| Channels | #cdk index | Today | | Search | Google Search | Plain-Text | summary