Camelia, the Perl 6 bug

IRC log for #cdk, 2009-03-14

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All times shown according to UTC.

Time Nick Message
00:54 Mattq joined #cdk
00:54 Mattq what is this channel all about
00:55 Mattq left #cdk
05:57 egonw joined #cdk
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12:48 rajarshi joined #cdk
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14:47 rajarshi joined #cdk
14:47 rajarshi hi
14:47 zarah oh hai rajarshi
15:03 egonw hej rajarshi
15:03 * egonw just got back from fetching wood for the fireplace
15:04 egonw rajarshi: where will you be located? I guess you will have to move?
15:24 rajarshi egonw, rockville, maryland
15:24 rajarshi which is 10 minutes north of bethesda and about 30 min from Washington DC
15:24 * egonw boots google maps
15:24 rajarshi :)
15:24 egonw OK
15:24 egonw I know that last one
15:25 rajarshi finally, I will have access to proper international cuisine :)
15:25 egonw :)
15:25 rajarshi btw, when will the smarts bug fix show in master? sf git browse doesn't show any commits
15:26 egonw finally done with the hamburgers :)
15:26 rajarshi ha ha
15:26 egonw yes, was just about to do that
15:26 rajarshi bloomington, has some good food - but doesn't compare to a large city like DC
15:27 egonw done
15:27 egonw I love git :)
15:27 rajarshi :)
15:27 egonw never looked at DC from the aire...
15:27 egonw it's not that big actually
15:27 rajarshi no - quite small
15:27 rajarshi mainly govt offices/buildings
15:28 egonw never been really aware of that...
15:28 rajarshi but diplomats have to eat, so there's good food :)
15:28 egonw well... been there only a few days
15:28 rajarshi crappy weather though
15:28 egonw and more in georgetown than DC really :)
15:28 rajarshi georgetown is very nice
15:28 rajarshi work or pleasure/
15:29 egonw when will you start?
15:29 rajarshi 18th May
15:29 egonw that soon
15:29 egonw two months...
15:29 rajarshi (that's why I'm fiddling so much with the CDK - no reall work till then :)
15:30 egonw ic :)
15:30 rajarshi btw, got pubchem fp's working
15:30 egonw oh, nice! and quick...
15:30 rajarshi NCGC did the main grunt work of writing each bit.
15:30 egonw there wasn't that much special in there then?
15:31 rajarshi no - just ring counts, smarts searches etc
15:31 egonw NCGC?
15:31 egonw ic
15:31 rajarshi nih chemical genomics center
15:31 egonw NCGC rewrote the NIH FPs into CDK code?
15:31 egonw or did I misunderstand somtehing?
15:32 rajarshi no, they wrote the Pubchem FP using JChem from ChemAxon
15:32 rajarshi I ported it to the CDK
15:32 egonw ah, ok
15:32 egonw well, looking forward to the patch...
15:32 egonw really hope to have soon more time for reviewing...
15:32 rajarshi needs the smarts bug fix to be in trunk
15:33 egonw and should really ping Chris to do bits of reviewing too...
15:33 egonw rajarshi: yes, yes...
15:33 rajarshi egonw, :)
15:33 egonw [16:27:12] <egonw> done
15:33 egonw I think you missed it :)
15:33 egonw git makes merging *so* *much* easier :)
15:34 rajarshi just saw it
15:34 rajarshi absolutely
15:34 rajarshi and the cool thing is I can merge between my own branches so that i'm all locally up to date and then just rebase with master when they go public
15:34 egonw :)
15:35 rajarshi btw, does a git pull do a merge automatiucally?
15:35 egonw git svn rebase does
15:35 egonw not sure about git pull
15:36 egonw I think so...
15:36 egonw I think the git fetch does not do it
15:36 rajarshi duh! man git-pull
15:37 egonw btw, the 'gitk' history lines look pretty OK
15:38 egonw not sure when trunk and cdk-1.2.x will become incompatible though...
15:38 egonw with upcoming API clean ups
15:38 rajarshi right
15:42 rajarshi patch request for pubchem fp's put into the tracker
15:43 egonw OK
15:43 egonw rajarshi++
15:43 egonw trunk only?
15:43 egonw or suitable for 1.2.x?
15:43 rajarshi should be doable for 1.2.x as well
15:44 rajarshi btw, is there going to be any 'live' features at the CDK workshop? I'm really bummed I couldn't make it
15:44 egonw I guess so
15:44 egonw EBI has good network
15:44 egonw wireless
15:44 egonw so, I guess there will be live coverage...
15:44 rajarshi cool
15:44 egonw not sure about video and sorts...
15:44 rajarshi audio or web conf stuff would be really cool
15:45 egonw but at least blogging and FF
15:45 egonw and twitter
15:45 rajarshi great
15:45 egonw traditionally, we also keep live notes in the wiki...
15:46 rajarshi right, I saw that. I was hoping for a degree of interactivity
15:46 egonw #cdk ?
15:46 rajarshi right, that's there
15:46 rajarshi but audio would be nice
15:46 rajarshi btw, cn you private message me
15:46 egonw yes, indeed...
16:00 edrin joined #cdk
17:22 rajarshi test-dist-large fails
17:23 egonw trunk or branch?
17:23 rajarshi trunk
17:23 egonw dinner is almost done...
17:23 rajarshi Includesfile /home/rguha/tmp/nightly/trunk/cdk/sr​c/META-INF/test-ioformats.libdepends not found
17:23 egonw mmm...
17:25 egonw well, there should not be one...
17:25 egonw but the build.xml should not complain about it
17:26 egonw and there is no diff between build.xml in trunk and cdk1.2.x ...
17:26 * egonw is puzzled
17:28 * egonw wonders if patch emails should go to cdk-user
17:28 rajarshi mgiht be useful
17:28 egonw to get more eyes...
17:29 egonw -devel: 84 subscribers
17:29 egonw -user: 108
17:29 egonw 48 more eyes :)
17:29 egonw ok, dinner ready
17:30 egonw bbl
17:30 rajarshi hmm, but the dev is going to be a subset of user
17:30 rajarshi later
17:30 egonw ps, master test-dist-all seems to work here
17:35 rajarshi build.xml has the line (in target dist-test-large) <includesfile name="${metainf}/test-ioformats.libdepends"/>
17:35 rajarshi this is the problem
18:12 egonw rajarshi: ping
18:12 rajarshi hi
18:12 zarah hello rajarshi, you fantastic person you
18:12 egonw I see this line:
18:13 egonw <includesfile name="${metainf}/${module}.libdepends" if="module.libdepends.present" />
18:13 rajarshi can you give the line number
18:13 egonw 340
18:13 rajarshi are you looking at dist-test-large?
18:14 rajarshi the line I pasted was from line 720
18:15 egonw ah, iv
18:15 egonw indeed
18:15 egonw ok, fixing...
18:15 rajarshi ok
18:17 egonw commited
18:18 rajarshi thanks
18:18 rajarshi in doc/java/build.xml, does your java.ext.dirs contain rt.jar/
18:19 rajarshi in sun jdk 1.6, this dir does not contain rt.jar
18:20 egonw oi... never tried that build file in a very long time
18:21 rajarshi keywords doesn't work now
18:23 egonw line 126?
18:23 rajarshi line 7
18:32 egonw the overview target is nice
18:32 egonw Package org.openscience.cdk
18:32 egonw Object types
18:32 egonw classes   : 39
18:32 egonw interfaces: 1
18:32 egonw Object accessibility
18:32 egonw public    : 40
18:32 egonw private   : 0
18:32 egonw protected : 0
18:32 egonw Object has description
18:32 egonw with      : 40
18:32 egonw without   : 0
18:32 egonw Object authors stats
18:32 egonw egonw : 2
18:32 egonw Rajarshi Guha : 1
18:32 egonw Bradley A. Smith <yeldar@home.com> : 1
18:32 egonw Martin Eklund : 1
18:32 egonw Egon Willighagen <elw38@cam.ac.uk> : 1
18:32 egonw Edgar Luttmann <edgar@uni-paderborn.de> : 3
18:32 egonw steinbeck : 8
18:32 egonw Martin Eklund <martin.eklund@farmbio.uu.se> : 2
18:32 egonw miguelrojasch <miguelrojasch@yahoo.es> : 1
18:32 egonw etc
18:33 rajarshi nice
18:33 rajarshi what does author stats mean/
18:34 egonw dunno
18:34 egonw did not even know this existed
18:34 rajarshi lol
18:34 egonw I think this must be extracted from the JavaDocs...
18:34 egonw it's not overly consistently used...
18:36 egonw OK, there you go :)
18:36 rajarshi ?
18:36 egonw I still need to figure out how to integrate git@sf with the CIA bot network
18:36 egonw but build.xml fixes uploaded
18:36 rajarshi that'd be useful
18:36 egonw keyword index building works for me again
18:36 egonw indeed
18:36 rajarshi OK, i'll try it
18:36 egonw OK, got to take kids t obed now
18:36 rajarshi updating nightly now
18:37 rajarshi bye
18:37 egonw bye
18:37 egonw thanx!
18:37 egonw I'll look into setting up a Nightly meta page soon...
18:37 egonw that will summarize Nightly's running
18:37 rajarshi nice
18:38 egonw meanwhile...
18:38 egonw the git web frontend has a RSS feed...
18:38 egonw bbl
18:48 CIA-62 cdk: rajarshi * r14492 /nightly/trunk/ (nightly.config.sample nightly.py): Updated config example to include a git branch variable
19:01 egonw OK, I think I had enough for today...
19:01 egonw going to watch a movie and hit bed afterwards...
19:01 rajarshi ttyl
19:01 egonw bye
19:13 CIA-62 cdk: rajarshi * r14493 /nightly/trunk/nightly.py: Updated nightly.py to work with the Git repo. Cleaned up the code a bit. Added code to determine OS and JDK on the fly vai Ant
19:35 CIA-62 cdk: rajarshi * r14494 /nightly/trunk/nightly.py: Updated to write out the pickle if its run the first time
20:05 jpansanel moin
20:05 zarah oh hai jpansanel

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