Camelia, the Perl 6 bug

IRC log for #cdk, 2009-04-23

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All times shown according to UTC.

Time Nick Message
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11:55 maclean hi shk3 : I see what you mean about scrolling. It really doesn't work on the editor applet.
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12:21 maclean shk3_ : scrolling works on the editor applet if you have the width/height parameters slightly larger in the html
12:26 shk3_ do loaded files show up correctly?
12:28 shk3_ I will be in the office later, lets have a look then
12:28 maclean ok
12:28 maclean no, the viewer applet doesn't centre correctly :(
12:30 shk3_ :(
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13:44 maclean rajarshi : I tried out the xml format pharmacophore search, and it reminded me a bit of JESS at the CSA.
13:44 maclean http://www.ebi.ac.uk/thornton-srv/databases/cgi-​bin/CSA/CSA_Download_Template.cgi?evidence_id=RE​P00350&atoms_used=fa&template_type=jess
13:44 zarah maclean's link is also http://tinyurl.com/cy3kkb
13:44 maclean for example.
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14:58 rajarshi maclean,
14:58 rajarshi maclean, hi
14:58 maclean hi
14:58 rajarshi what is jess for?
14:58 zarah hello maclean, you fantastic person you
14:58 maclean searching of catalytic sites, I think.
14:59 rajarshi aah
14:59 rajarshi i didn't put too much thought into the p'phore format
15:00 rajarshi so it's pretty basic
15:00 maclean sure.
15:03 maclean I just think that pharmacophore patterns mesh nicely with catalytic site patterns...I'm just not sure how, exactly :)
15:06 rajarshi indeed - though I think you'd want to have more expressivity than std SMARTS - looks like Jess has constructs for residue etc
15:09 maclean true
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16:43 CIA-58 cdk: gilleain * r14560 /jchempaint/trunk/src/main/org/openscience/jch​empaint/action/EditChemObjectPropsAction.java: Container.setVisible(true) instead of the deprecated show() method.
16:51 rojasm joined #cdk
16:59 CIA-58 cdk: gilleain * r14561 /cdk/branches/jchempaint-primary/src/main/o​rg/openscience/cdk/renderer/Renderer.java:
16:59 CIA-58 cdk: - Added setup(<chemObject>, screen) methods to set the initial transform for molecules.
16:59 CIA-58 cdk: - Added the missing calculateBounds(ChemModel) method.
16:59 CIA-58 cdk: - Removed an unused method.
16:59 CIA-58 cdk: - Fixed bug #2771009 (NPE on zap).
17:04 CIA-58 cdk: gilleain * r14562 /cdk/branches/jchempaint-primary/src/main/org/​openscience/cdk/controller/ControllerHub.java: Access modifier missing on member that is clearly private.
17:21 CIA-58 cdk: gilleain * r14563 /jchempaint/trunk/src/main/org/opens​cience/jchempaint/RenderPanel.java: Use the new setup method instead of just setting the scale.
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19:00 rajarshi shk3, hi, still couldn't get the update. can you send a patch using git format-patch
19:01 shk3 will try
19:02 rajarshi thanks
19:04 shk3 sent
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