Camelia, the Perl 6 bug

IRC log for #cdk, 2009-07-02

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All times shown according to UTC.

Time Nick Message
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06:30 jpansanel moin
06:30 zarah saluton jpansanel
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09:11 jpansanel egonw : did you update recently the CDK logo on Wikipedia ?
09:11 jerome joined #cdk
09:58 CIA-59 cdk: shk3 * r14635 /jchempaint/trunk/src/main/org/openscienc​e/jchempaint/action/CopyPasteAction.java: copy with empty selection caused an npe
10:04 carsten Moin folks
10:04 carsten do you know a list of chemical "shortcuts"
10:04 carsten Et -> C2H5
10:04 carsten Me -> CH4
10:04 carsten and so on
10:05 carsten ?
11:08 egonw http://www.iupac.org/reports/provisional/​abstract04/RB-prs310804/TableVII-3.04.pdf
11:08 zarah egonw's link is also http://tinyurl.com/nh543q
11:09 egonw carsten: left the link in your students blog
11:13 carsten egonw: w00p, that is a long table!
11:14 egonw :)
11:14 carsten and 5 years old while still not official
11:14 carsten egonw: I am currently coding in Python, a predator/prey simulator
11:14 carsten Python really rocks, seriously even L:)
11:15 egonw nice
11:15 egonw checkout cinfony which has CDK support
11:16 carsten http://code.google.com/p/cinfony/ ... looks cool
11:16 zarah carsten's link is also http://tinyurl.com/melth7
11:16 egonw Blue Obelisk's Noel O'Boyle
11:17 egonw @google Noel O'Boyle
11:17 carsten I case you want to look at my work: http://github.com/cniehaus/biotools/tree/b839465​7ddae121e7b1a39ef92b66042fd0cd360/raeuber-beute
11:17 zarah egonw: http://www.redbrick.dcu.ie/~noel/
11:17 zarah carsten's link is also http://tinyurl.com/ngsz5k
11:18 egonw using Qt for UI?
11:19 carsten PyQt, yes
11:20 carsten this is the only really important file: http://github.com/cniehaus/biotools/​blob/b8394657ddae121e7b1a39ef92b6604​2fd0cd360/raeuber-beute/gui-test.py
11:21 zarah carsten's link is also http://tinyurl.com/kwkujl
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13:03 CIA-59 cdk: goglepox * r14636 /cdk/branches/jchempaint-primary/src/ma​in/org/openscience/cdk/controller/edit/ (. IEdit.java): Interface for molecule edit operation
13:03 CIA-59 cdk: goglepox * r14637 /cdk/branches/jchempaint-primary/src/main/org/op​enscience/cdk/controller/edit/AbstractEdit.java: Abstract base class for edit operations
13:03 zarah joined #cdk
13:04 CIA-59 cdk: goglepox * r14638 /cdk/branches/jchempaint-primary/src/ma​in/org/openscience/cdk/controller/edit/ (5 files): Implementations for a few basic edit operations
13:04 CIA-59 cdk: goglepox * r14639 /cdk/branches/jchempaint-primary/src/​main/org/openscience/cdk/controller/ (ControllerHub.java IChemModelRelay.java): Changes to IChemModelRelay and ControllerHub to accept IEdit operations
13:04 CIA-59 cdk: goglepox * r14640 /cdk/branches/jchempaint-primary/src/main/org/op​enscience/cdk/controller/AddBondDragModule.java: Ported AddBondDragModule to use IEdit operations
13:05 CIA-59 cdk: goglepox * r14641 /cdk/branches/jchempaint-primary/src/main/org/op​enscience/cdk/controller/AddBondDragModule.java: Fixed dragging and clicking adds
13:05 CIA-59 cdk: goglepox * r14642 /cdk/branches/jchempaint-primary/src/​main/org/openscience/cdk/controller/ (8 files in 2 dirs):
13:05 CIA-59 cdk: Implemented event types and defining what events
13:05 CIA-59 cdk: each edit causes.
13:05 CIA-59 cdk: goglepox * r14643 /cdk/branches/jchempaint-primary/src/main/org/​openscience/cdk/controller/ControllerHub.java: Added firing of appropriate events when executing edit operation
13:06 CIA-59 cdk: goglepox * r14644 /cdk/branches/jchempaint-primary/src/​main/org/openscience/cdk/controller/ (ControllerHub.java undoredo/IUndoRedoFactory.java): Added method to IUndoRedoFactory for handling of IEdits
13:06 CIA-59 cdk: goglepox * r14645 /cdk/branches/jchempaint-primary/src/​main/org/openscience/cdk/controller/ (8 files in 2 dirs): Added @cdk.module to new classes
13:07 CIA-59 cdk: goglepox * r14646 /cdk/branches/jchempaint-primary/src/main/org/op​enscience/cdk/controller/edit/AbstractEdit.java: Made helper method static
13:07 CIA-59 cdk: goglepox * r14647 /cdk/branches/jchempaint-primary/src/main/org/​openscience/cdk/controller/ControllerHub.java: Added TODO for calculation implicit hydrogen and aromacity
13:08 zarah joined #cdk
13:09 shk3 hi egonw
13:10 egonw hi
13:10 zarah hello egonw, you fantastic person you
13:10 egonw zarah: shut up
13:10 zarah egonw: no, YOU shut up!
13:10 shk3 how are bug fixes for jchempaint-primary handled?
13:12 jpansanel carsten, are you still online ?
13:15 zarah joined #cdk
13:17 zarah joined #cdk
13:17 carsten I am, yes
13:17 carsten jpansanel: ^^^
13:29 zarah joined #cdk
13:32 egonw shk3: in what respect?
13:39 shk3 well, which branch is used?
13:39 shk3 still the jcp-primary?
13:39 shk3 or have you already ported?
13:39 shk3 I don't want to mess up things
13:40 egonw we are using jcp-primary
13:41 egonw you can send me a patch
13:41 egonw or to cdk-jchempaint
13:43 egonw the port to the modular controllerhub is in progress
13:44 CIA-59 cdk: egonw * r14648 /cdk/branches/jchempaint-primary/src​/test/org/openscience/cdk/renderer/ (RendererTest.java RendererTestPanel.java): Added missing copyright/license header; added missing cdk.module annotation
13:45 shk3 ok
13:45 shk3 it's in the controller hub
13:45 shk3 bug fix, no new stuff
13:45 shk3 that will not conflict with your port?
13:46 egonw it will likely
13:46 egonw send a patch to cdk-jchempaint
13:46 egonw or file a bug report
13:46 jpansanel carsten : I think that you don't received my mail at gmx
13:47 jpansanel I've sent you again the patch for Kalzium
13:47 jpansanel but I think that you did not receive it
13:48 CIA-59 cdk: egonw * r14649 /cdk/branches/jchempaint-primary/ (28 files in 5 dirs): Set up unit test suites for the rendering modules: empty suites + coverage testing
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13:57 CIA-59 cdk: shk3 * r14650 /jchempaint/trunk/META-INF/ (applet-core.files applet-editor.files): updated the class lists
14:05 carsten joined #cdk
14:06 carsten jpansanel: hey, just got an mail!
14:06 carsten about GHNS
14:08 jpansanel ok
14:08 jpansanel I've used another email address
14:15 CIA-59 cdk: shk3 * r14651 /jchempaint/trunk/build.xml: added controlbasic
14:23 shk3 egonw: i have problems compiling jcp-primary
14:23 shk3 it seems the classes in controlbasic are not found
14:24 shk3 could you have a look, please?
14:30 egonw testing
14:31 shk3 this is using ant, btw
14:32 zarah joined #cdk
14:33 egonw oh... indeed
14:33 egonw bug/limitations in runDoclet...
14:37 CIA-59 cdk: egonw * r14652 /cdk/branches/jchempaint-primary/javadoc.xml: Removed all jcpprim non-specific modules and added new render modules
14:37 CIA-59 cdk: egonw * r14653 /cdk/branches/jchempaint-primary/ (pmd-migrating.xml pmd-unused.xml pmd.xml): Added the new render modules
14:38 CIA-59 cdk: egonw * r14654 /cdk/branches/jchempaint-primary/src/main/​net/sf/cdk/tools/MakeJavafilesFiles.java: Added support for 'public enum's
14:40 CIA-59 cdk: egonw * r14655 /cdk/branches/jchempaint-primary/src/main/org/op​enscience/cdk/controller/AddBondDragModule.java: Placed in correct module, fixing the dependency compile errors
14:40 egonw shk3: try now
14:40 shk3 down to 10 errors from 19
14:40 shk3 mom
14:40 shk3 a commit was after my update
14:40 shk3 testing
14:41 shk3 works
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14:53 shk3 egonw: there is no cdk-controlbasic.jar built.
14:53 shk3 is that intended?
14:53 shk3 which jar are the classes from that module in then?
14:53 egonw no
14:53 egonw build.xml is not updated yet
15:01 CIA-59 cdk: egonw * r14656 /nightly/branches/: Added folder for branches
15:03 CIA-59 cdk: egonw * r14657 /nightly/branches/nightly-svn/: Created branch that still worked with SVN repositories
15:42 CIA-59 cdk: egonw * r14658 /cdk/branches/jchempaint-primary/ (5 files): Added hooks for new controlbasic module
15:50 egonw bbl
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18:04 CIA-59 cdk: egonw * r14659 /cdk/branches/jchempaint-primary/src/META-INF/ (controlbasic.cdkdepends controlbasic.libdepends): Added missing compile dependency definition files for controlbasic
18:05 CIA-59 cdk: egonw * r14660 /cdk/branches/jchempaint-primary/ (8 files in 4 dirs): Set up module testing for controlbasic
18:06 CIA-59 cdk: egonw * r14661 /cdk/branches/jchempaint-primary/src/META-INF/ (3 files): Added missing dependencies, fixing running of the test suites, for control, renderawt and rendersvg
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