Camelia, the Perl 6 bug

IRC log for #cdk, 2009-08-05

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All times shown according to UTC.

Time Nick Message
00:18 mgerlich joined #cdk
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20:00 CIA-72 cdk: Egon Willighagen cdk-1.2.x * r3b82340 / jar/xom-1.1.jar : Unsealed the XOM jar to allow having the CustomSerializer - http://bit.ly/10CzyX
20:00 CIA-72 cdk: Egon Willighagen cdk-1.2.x * rf77db9c / jar/xom-1.1.jar : Merge branch 'cdk-1.2.x' of ssh://egonw@cdk.git.sourceforge.net/gitroot/cdk into cdk-1.2.x - http://bit.ly/VxMOm
20:00 CIA-72 cdk: Egon Willighagen cdk-1.2.x * rb055c6b / (3 files in 3 dirs): Moved class into a org.openscience.cdk package, which seems to work now. I'm puzzled why it did not before. Solved several unit test fails. - http://bit.ly/3DwXkl
21:36 egonw grmph...
23:31 CIA-72 cdk: Egon Willighagen cdk-1.2.x * rf19a451 / (4 files in 2 dirs):
23:31 CIA-72 cdk: Added two unit tests for the same problem: carbon atom types are not correctly perceived if bond order info is SINGLE only, and hydrogen count and aromaticity flag is set.
23:31 CIA-72 cdk: Signed-off-by: Rajarshi Guha <rajarshi.guha@gmail.com> - http://bit.ly/6JYEk
23:31 CIA-72 cdk: Egon Willighagen cdk-1.2.x * r863b0a5 / src/test/org/openscience/cdk/atomty​pe/CDKAtomTypeMatcherFilesTest.java :
23:31 CIA-72 cdk: Added assertions to unit test for values being not null
23:31 CIA-72 cdk: Signed-off-by: Rajarshi Guha <rajarshi.guha@gmail.com> - http://bit.ly/amZSX
23:31 CIA-72 cdk: Egon Willighagen cdk-1.2.x * r05e0be3 / src/main/org/openscience/cdk/at​omtype/CDKAtomTypeMatcher.java :
23:31 CIA-72 cdk: Fixed perception of benzene with all single bond, but hydrogen count 1 and bonds flagged aromatic. In this case, the type is C.sp2 not C.sp3.
23:31 CIA-72 cdk: Signed-off-by: Rajarshi Guha <rajarshi.guha@gmail.com> - http://bit.ly/1awBXS
23:31 CIA-72 cdk: Egon Willighagen cdk-1.2.x * r1714de2 / src/main/org/openscience/cdk/at​omtype/CDKAtomTypeMatcher.java :
23:31 CIA-72 cdk: Fixed perception of N.planar3 where N.sp2 was detected, by now taking into account the given hydrogen count.
23:31 CIA-72 cdk: Signed-off-by: Rajarshi Guha <rajarshi.guha@gmail.com> - http://bit.ly/1aeF5Y

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