Camelia, the Perl 6 bug

IRC log for #cdk, 2009-10-22

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All times shown according to UTC.

Time Nick Message
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09:44 LillePedro Eclipse will not compile. What am I missing: Having downloaded the contents of git://github.com/egonw/bio​clipse.cheminformatics.git I simply imported the project "org.openscience.cdk.core" from ./cdk-externals/trunk into eclipse. Unfortunately, the project will not compile partly due to missing class org.openscience.cdk.annotations.TestClass. Can someone please provide a comprehensive...
09:44 LillePedro ...step-by-step guide in order to get a working Eclipse environment?
09:51 egonw have you done the 'set target platform' step?
09:51 egonw oh, wait...
09:51 egonw this is #cdk, not #bioclipse... :)
09:51 egonw ok, I see the problem...
09:52 egonw org.openscience.cdk.annotations
09:52 egonw you need to get that from the bioclipse.core repository
09:52 egonw github.com/olas/bioclipse.core
09:52 egonw and the org.openscience.cdk.ioformats from that repos too
11:17 LillePedro thanks. what's the repo for getting hold of class org.openscience.cdk.io.CIFReaderTest and org.openscience.cdk.graph.rebond.RebondToolTest?
11:19 egonw oh...
11:19 egonw ummm....
11:19 egonw there are no eclipse plugins for that...
11:20 egonw they can be found in the main CDK git repository...
11:20 egonw and the repository with the jchempaint-primary patch
11:20 egonw which is likely the one you would be more interested in
11:20 egonw http://pele.farmbio.uu.se/cgi-bin/git​web.cgi?p=jchempaint-primary.git;a=sh​ortlog;h=refs/heads/bioclipse-2.1.x
11:20 zarah egonw's link is also http://tinyurl.com/l72447
11:20 egonw that's the web interfaces for it
11:21 egonw http://pele.farmbio.uu.se/g​it/jchempaint-primary.git/
11:21 zarah egonw's link is also http://tinyurl.com/l7zegy
11:21 egonw that's the git entry
11:21 egonw but keep in mind that this one is frequently rebased
11:21 egonw meaning that instead of git updates, you can best do new clone instead when you want to update
11:28 LillePedro Last time I checked http://pele.farmbio.uu.se/g​it/jchempaint-primary.git/ there were no AtomContainerRenderer to satisfy our need to render a debug gui of our work.  So basically I need a rendering mechanism compatible with jchempaint-primary.
11:28 zarah LillePedro's link is also http://tinyurl.com/l7zegy
11:33 egonw LillePedro: make sure you take the bioclipse-2.1.x branch
11:33 egonw the master branch indeed does not
11:33 egonw http://pele.farmbio.uu.se/cgi-bin/git​web.cgi?p=jchempaint-primary.git;a=sh​ortlog;h=refs/heads/bioclipse-2.1.x
11:33 zarah egonw's link is also http://tinyurl.com/l72447
11:34 egonw LillePedro: so what you'd do would be:
11:34 LillePedro How do I switch from master branch to bioclipse-2.1.x branch?
11:34 egonw (I think you already did this step) git clone http://pele.farmbio.uu.se/g​it/jchempaint-primary.git/
11:34 zarah egonw's link is also http://tinyurl.com/l7zegy
11:34 egonw then
11:34 egonw git checkout -b bc-2.1.x origin/bioclipse-2.1.x
11:35 egonw that will create a local branch checkout of the upstream bioclipse-2.1.x branch
11:35 egonw of which I just gave the link...
11:43 egonw LillePedro: does that work for you?
11:44 LillePedro thanks for the input. I am currently cloning. Wish me goodluck ;-)
11:44 egonw thumbs up
11:45 egonw if only we had good funding for JChemPaint development, we would have more manpower to make all these things easier
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11:52 CIA-29 cdk: Egon Willighagen 81-ojdcheck * rc5a6a81 / javadoc.xml : Now uses all three CDK-specific ojdcheck tests - http://bit.ly/2XyqMM
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11:53 olass moin
11:53 zarah hello olass, you fantastic person you
11:53 olass zarah: you are the flattering one
11:53 zarah olass: oh, shut up :)
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19:25 CIA-29 cdk: aherraez * r15006 /jchempaint/trunk/po/es.po: Spanish

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