Camelia, the Perl 6 bug

IRC log for #cdk, 2009-11-01

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All times shown according to UTC.

Time Nick Message
07:14 bag joined #cdk
07:55 egonw joined #cdk
12:54 CIA-70 cdk: Egon Willighagen 73-rdf * r7753ca2 / (3 files in 2 dirs): Added (de)serialization of the IPseudoAtom fields to RDF - http://bit.ly/1wMlkf
13:14 CIA-70 cdk: Egon Willighagen cdk-1.2.x * r1107fb2 / (2 files): Fixed Taglets: only return HTML if the Tag is really given; the toString() method is given for all cases, not just when the tag is found - http://bit.ly/2zcGLs
14:34 CIA-70 cdk: Egon Willighagen master * r46893ed / (48 files in 23 dirs): (log message trimmed)
14:34 CIA-70 cdk: Changed IBond.get/setStereo() to use a IBond.Stereo enumeration instead of an int (fixes #2855850):
14:34 CIA-70 cdk: * updated the core interfaces at various locations
14:34 CIA-70 cdk: * and updated implementations accordingly
14:34 CIA-70 cdk: * at a few locations had to interpret what was going on,
14:34 CIA-70 cdk:  where hard coded int were used instead of meaningful constants
14:34 CIA-70 cdk: * added two unit tests to see if stereo info is properly read
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15:01 CIA-70 cdk: Egon Willighagen cdk-1.2.x * r56852f8 / src/test/org/openscience/cdk/io/MDLWriterTest.java :
15:01 CIA-70 cdk: Added unit test to verify that if 2D and 3D coordinates are available, the 3D coordinates are outputted.
15:01 CIA-70 cdk: * formalizing the current writer implementation
15:01 CIA-70 cdk: Signed-off-by: Rajarshi Guha <rajarshi.guha@gmail.com> - http://bit.ly/1n9IkV
15:01 CIA-70 cdk: Egon Willighagen cdk-1.2.x * r0e6aa2c / src/main/org/openscience/cdk/io/MDLWriter.java :
15:01 CIA-70 cdk: Added writer IO option to force writing of 2D coordinates if 3D coordinates are present too, which now are preferably outputted.
15:02 CIA-70 cdk: Signed-off-by: Rajarshi Guha <rajarshi.guha@gmail.com> - http://bit.ly/29RaIC
15:02 CIA-70 cdk: Egon Willighagen cdk-1.2.x * r4e2b2bf / src/test/org/openscience/cdk/io/MDLWriterTest.java :
15:02 CIA-70 cdk: Added unit test to the function of the new IO setting to force 2D coordinate output.
15:02 CIA-70 cdk: Signed-off-by: Rajarshi Guha <rajarshi.guha@gmail.com> - http://bit.ly/2ccawe
15:11 CIA-70 cdk: Egon Willighagen master * ra91062b / src/main/org/openscience/cdk/dic​t/data/descriptor-algorithms.owl :
15:11 CIA-70 cdk: Synchronized with the Blue Obelisk version
15:11 CIA-70 cdk: Signed-off-by: Rajarshi Guha <rajarshi.guha@gmail.com> - http://bit.ly/1W4OFc
16:34 CIA-70 cdk: Egon Willighagen cdk-1.2.x * rb833176 / src/test/org/openscience/cdk/inte​rfaces/AbstractChemModelTest.java :
16:34 CIA-70 cdk: Fixed unit tests: the IChemModel.setFoo(null) should actually give a change event on the listener of the IChemModel, and not after unregistering of the Foo object.
16:34 CIA-70 cdk: Signed-off-by: Rajarshi Guha <rajarshi.guha@gmail.com> - http://bit.ly/2HMhHI
16:34 CIA-70 cdk: Egon Willighagen cdk-1.2.x * r0c8a88f / src/main/org/openscience/cdk/ChemModel.java :
16:34 CIA-70 cdk: Fixed propagation of change events to IChemModel when modifications are made in child IChemObjects
16:34 CIA-70 cdk: Signed-off-by: Rajarshi Guha <rajarshi.guha@gmail.com> - http://bit.ly/1ttnhE
16:34 CIA-70 cdk: Egon Willighagen cdk-1.2.x * r2993e0c / src/test/org/openscience/cdk/inte​rfaces/AbstractChemModelTest.java :
16:34 CIA-70 cdk: Added missing unit tests for IChemModel event propagation for the ICrystal field
16:34 CIA-70 cdk: Signed-off-by: Rajarshi Guha <rajarshi.guha@gmail.com> - http://bit.ly/2UB4V8
16:34 CIA-70 cdk: Egon Willighagen cdk-1.2.x * r36f295b / src/test/org/openscience/cdk/​nonotify/NNChemModelTest.java :
16:34 CIA-70 cdk: Overwrite unit tests, because there are no change events passed around at all for the NoNotification interface implementations
16:34 CIA-70 cdk: Signed-off-by: Rajarshi Guha <rajarshi.guha@gmail.com> - http://bit.ly/1rkIlZ
17:20 CIA-70 cdk: Rajarshi Guha master * r024499e / src/main/org/openscience/cd​k/PeriodicTableElement.java :
17:20 CIA-70 cdk: A minor fix to clean up a PDMD warning
17:20 CIA-70 cdk: Signed-off-by: Rajarshi Guha <rajarshi.guha@gmail.com> - http://bit.ly/1OsFrD
17:20 CIA-70 cdk: Egon Willighagen master * rcb824f1 / (4 files in 4 dirs):
17:20 CIA-70 cdk: Added reading of E/Z stereochemistry from double bonds in MDL V2000 molfiles.
17:20 CIA-70 cdk: * defined E_OR_Z for unknown (but present) stereochemistry
17:20 CIA-70 cdk: * defined E_Z_BY_COORDINATES for know stereochemistry, as defined by
17:20 CIA-70 cdk:  2D or 3D coordinates.
17:21 CIA-70 cdk: Signed-off-by: Rajarshi Guha <rajarshi.guha@gmail.com> - http://bit.ly/3bFXHE
17:21 CIA-70 cdk: Rajarshi Guha master * rffe9576 / (4 files in 4 dirs): Merge branch 'stereo' - http://bit.ly/2mjLg4
18:01 CIA-70 cdk: Egon Willighagen master * r1cec794 / (5 files):
18:01 CIA-70 cdk: Added unit tests for detection of PubChem XML files.
18:01 CIA-70 cdk: * unit test with XML without new lines (see bug #2832835)
18:01 CIA-70 cdk: * unit tests with false positives: do not recognize the
18:01 CIA-70 cdk:  PubChem XML *list* variant of the same format.
18:02 CIA-70 cdk: Signed-off-by: Rajarshi Guha <rajarshi.guha@gmail.com> - http://bit.ly/3zGu1n
18:02 CIA-70 cdk: Egon Willighagen master * ra1f25d8 / (4 files):
18:02 CIA-70 cdk: Fixed matchers to allow XML without new lines (closes #2832835)
18:02 CIA-70 cdk: Signed-off-by: Rajarshi Guha <rajarshi.guha@gmail.com> - http://bit.ly/4BLv6X
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18:14 CIA-70 cdk: Egon Willighagen cdk-1.2.x * r571f434 / (5 files):
18:14 CIA-70 cdk: Added unit tests for detection of PubChem XML files.
18:14 CIA-70 cdk: * unit test with XML without new lines (see bug #2832835)
18:14 CIA-70 cdk: * unit tests with false positives: do not recognize the
18:14 CIA-70 cdk:  PubChem XML *list* variant of the same format.
18:14 CIA-70 cdk: Signed-off-by: Rajarshi Guha <rajarshi.guha@gmail.com> - http://bit.ly/34BPa
18:14 CIA-70 cdk: Egon Willighagen cdk-1.2.x * rf9a0552 / (4 files):
18:14 CIA-70 cdk: Fixed matchers to allow XML without new lines (closes #2832835)
18:14 CIA-70 cdk: Signed-off-by: Rajarshi Guha <rajarshi.guha@gmail.com> - http://bit.ly/2JrIsY
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19:44 Conrad joined #cdk
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20:36 CIA-71 cdk: mark_rynbeek * r15034 /jchempaint/trunk/src/main/org/openscience/j​chempaint/resources/small-bin/templates.gif: bolder icon
23:20 slyrus_ joined #cdk

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