Camelia, the Perl 6 bug

IRC log for #cdk, 2009-11-24

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Time Nick Message
01:25 ilbot2 joined #cdk
01:25 Topic for #cdkis now The Chemistry Development Kit (http://cdk.sf.net) | JUnit CDK 1.2.x: 13968, 77 fails + 14 errors (0.65%) | Logs at http://moritz.faui2k3.org/​irclog/out.pl?channel=cdk | CDK News Feed: http://beta.friendfeed.com/ro​oms/chemistry-development-kit
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09:00 jpansanel moin
09:00 zarah hi jpansanel
09:01 jpansanel hi miguelrojasch
09:01 miguelrojasch hi jpansanel
09:01 jpansanel I saw your mail for mychem
09:01 miguelrojasch yeah I want to test it
09:01 miguelrojasch but I am really very bad with c++
09:02 miguelrojasch I found that I should change the way to compile but I don't know how
09:02 miguelrojasch do you have some experience with the problem?
09:03 jpansanel no
09:03 jpansanel It's the first time someone report this problem
09:03 jpansanel could you tell me which version of gnu cc you are using ?
09:04 miguelrojasch I found this:
09:04 miguelrojasch http://forums.devx.com/showthread.php?p=523511
09:04 miguelrojasch http://social.msdn.microsoft.com/Forums/en-US/vcla​nguage/thread/1d4563ea-64b2-4878-aa48-e9a0040b5aa9
09:04 zarah miguelrojasch's link is also http://tinyurl.com/yay9zc9
09:04 zarah miguelrojasch's link is also http://tinyurl.com/yjfh9xv
09:05 miguelrojasch gcc version 4.4.1 (Ubuntu 4.4.1-4ubuntu6)
09:06 miguelrojasch I tried in different ubuntu computers and I get always the same problems
09:07 miguelrojasch how did you see the email, it is still in "Your message to Mychem-devel awaits moderator approval" state, :(
09:10 jpansanel I'm Mychem-devel mailing list administrator ;)
09:11 jpansanel And the message has been published this morning on the mailing list
09:16 jpansanel can you also tell me which version of MySQL you are using ?
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09:21 miguelrojasch jpansanel I found that the MySQL Embedded not found.
09:21 miguelrojasch what is exactly?
09:21 miguelrojasch where is it contained?
09:25 sneumann__ I have done some c++, can I have a link to that message ?
09:26 miguelrojasch sneumann__ I commit it to mychem-devel-bounces@lists.sourceforge.net
09:29 sneumann__ hm, http://sourceforge.net/mailarchive​/forum.php?forum_name=mychem-devel
09:29 zarah sneumann__'s link is also http://tinyurl.com/yz2g2ba
09:29 sneumann__ is blank :-(
09:29 miguelrojasch yes I got the email with "Your message to Mychem-devel awaits moderator approval"
09:30 sneumann__ the whole archive is blank ...
09:31 miguelrojasch I guess none wrote before
09:32 jpansanel yes
09:32 jpansanel miguerojash, you are the first !
09:32 jpansanel MySQL Embedded is a mini lib for embedded apps
09:32 jpansanel it is not used by Mychem and the error is not fatal
09:33 miguelrojasch ack
09:36 jpansanel miguelrojasch : try to remove -fno-exceptions on line 150 in the CMakeLists.txt file (at the root of the project directory).
09:36 miguelrojasch ok
09:38 miguelrojasch it compile correctly now
09:38 miguelrojasch But now I have errors with openbabel
09:41 miguelrojasch does someone know the site page to paste code and errors? I don't remember :(
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09:45 jpansanel pastebin.com
09:46 miguelrojasch http://paste.lisp.org/display/91005
09:46 zarah miguelrojasch's link is also http://tinyurl.com/ya3ve9o
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10:02 jpansanel miguelrojash : are you using an official release of Open Babel or the trunk ?
10:02 miguelrojasch the branch 2.2
10:03 miguelrojasch what should I use?
10:04 jpansanel one of the official release (2.2.1, 2.2.2 or 2.2.3) with Mychem3
10:06 miguelrojasch ok I will tried again
10:07 jpansanel on my debian unstable, I run the following command:
10:08 jpansanel cmake -DOPENBABEL2_INCLUDE_DIR=/​usr/include/openbabel-2.0 -DOPENBABEL2_LIBRARIES=/usr/lib/libopenbabel.so ..
10:13 miguelrojasch ok! the problem was defining the openbabel library which I set a directory
10:14 miguelrojasch perfect thanks a lot of
10:14 miguelrojasch compiled without errors
10:15 jpansanel miguelrojasch : I'll update the documentation
10:15 jpansanel It seems it is not clear enough
10:17 miguelrojasch perfect. If you can patch the -fno-exceptions in trunk I would use it directly
10:21 jpansanel ok
10:35 jpansanel miguelrojasch : the svn has been updated
10:50 miguelrojasch jpansanel: how can I open the MychemAdmin?
10:50 miguelrojasch in the manual there is not explanation for that
10:51 miguelrojasch I already installed using the script > python setup.py install
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12:21 jpansanel miguelrojasch : enter mychemadmin.py on the command line
12:22 miguelrojasch thanks :)
12:24 jpansanel note that in next releases of mychem, this tools will be replaced by a new software based on Java
12:28 miguelrojasch I can get this software already from branch?
12:29 jpansanel no
12:29 jpansanel I did not start the devel !
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13:56 miguelrojasch jpansanel: how can I used mychem3-0.7.0/src/mychemdb.sql?
13:56 miguelrojasch I try to load directly from phpmyadmin I get some errors?
13:56 miguelrojasch this table it is not the base ?
16:59 CIA-84 cdk: shk3 * r15088 /jchempaint/trunk/src/main/​org/openscience/jchempaint/ (9 files in 3 dirs): This changes the display of move from arrow on panel to open/closed hand. Note the opne hand in java is not very nice, we can replace this with a custom image if desired.
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17:20 CIA-84 cdk: shk3 * r15089 /jchempaint/trunk/src/main/org/openscience​/jchempaint/controller/AddBondModule.java: removed the AddBondModule, since this was not used (replaced by addBondDragModule).
17:22 CIA-84 cdk: shk3 * r15090 /jchempaint/trunk/src/main/org/openscience/​jchempaint/controller/DrawBondModule.java: removed the DrawBondModule, since this was not used (presumably replaced by addBondDragModule as well).
17:38 jbrefort joined #cdk
18:31 CIA-84 cdk: shk3 * r15091 /jchempaint/trunk/src/main/​org/openscience/jchempaint/ (10 files in 5 dirs): the undo/redo of added bonds now also works if this did join two atomcontainers
18:47 CIA-84 cdk: shk3 * r15092 /jchempaint/trunk/src/main/org/opensci​ence/jchempaint/JCPMenuTextMaker.java: made all tooltips lower case except first letter
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