Camelia, the Perl 6 bug

IRC log for #cdk, 2010-07-22

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All times shown according to UTC.

Time Nick Message
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06:35 maclean hi
06:35 zarah ni hao maclean
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06:55 maclean egonw : around?
06:55 egonw yes
06:55 egonw oh crap
06:56 maclean I rediscovered where I had got to, and why I got stuck...
06:56 maclean oh crap?
06:56 egonw we have a conf call in an hour...
06:56 maclean yes, yes we do.
06:56 egonw almost forgot about that
06:56 maclean that's why I am up at 8 am...
06:56 egonw hehehe
06:56 maclean Instead of 14:00
06:57 maclean anyway, there is a problem with the CIP rules.
06:57 maclean a stack overflow/termination thing.
06:58 maclean on cycles, not surprisingly.
06:58 egonw yeah, I noted that too for some situations...
06:58 egonw I need to get that fixed indeed
07:00 maclean But, for non-cycles, I am now using the cip stuff; eg : "[C:S]([Br][Cl][F][I])"
07:00 egonw cool
07:00 maclean where ":S" is the chiral symbol (which could be changed).
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13:35 CIA-47 cdk: Egon Willighagen cdk-1.2.x * rbb431e3 / (3 files in 3 dirs):
13:35 CIA-47 cdk: Added the N.oxide atom type, for structures like (CH3)N=O
13:35 CIA-47 cdk: Signed-off-by: Rajarshi Guha <rajarshi.guha@gmail.com> - http://bit.ly/98b0kQ
13:35 CIA-47 cdk: Egon Willighagen cdk-1.2.x * r890d0f5 / src/test/org/openscience/cdk/atomtyp​e/CDKAtomTypeMatcherSMILESTest.java :
13:35 CIA-47 cdk: Added unit tests for SMILES with failing atom typing, from email on the cdk-devel mailing list June 11 2010
13:35 CIA-47 cdk: Signed-off-by: Rajarshi Guha <rajarshi.guha@gmail.com> - http://bit.ly/bWqSSF
13:35 CIA-47 cdk: Egon Willighagen cdk-1.2.x * rd71c31c / src/test/org/openscience/cdk/interf​aces/AbstractAtomContainerTest.java :
13:35 CIA-47 cdk: Unit test for ArrayIndexOutOfBoundsException occuring when trying to clone an IAtomContainer with an IBond with no IAtoms
13:35 CIA-47 cdk: Signed-off-by: Rajarshi Guha <rajarshi.guha@gmail.com> - http://bit.ly/d5QjOt
13:35 CIA-47 cdk: Egon Willighagen cdk-1.2.x * rc5d4cd3 / src/test/org/openscience/cdk/interf​aces/AbstractAtomContainerTest.java :
13:35 CIA-47 cdk: Exceptions when clone atomless ISingleElectron and ILonePair too
13:35 CIA-47 cdk: Signed-off-by: Rajarshi Guha <rajarshi.guha@gmail.com> - http://bit.ly/cEUYUX
13:44 CIA-47 cdk: Jules Kerssemakers master * r1574e42 / src/main/org/openscience/cd​k/io/IChemObjectReader.java :
13:44 CIA-47 cdk: added javadoc to IChemObjectReader explaining the split between ISimple and IIterating ChemObjectReaders
13:44 CIA-47 cdk: Signed-off-by: Rajarshi Guha <rajarshi.guha@gmail.com> - http://bit.ly/cM6gbA
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14:16 egonw jkerssem: btw, please do feel free to review comments too...
14:16 egonw if you see patches that relate to code you find interesting, your opinion is very much welcomed...
14:17 egonw all: this applies to everyone, of course
14:17 jkerssem Hi egon
14:17 egonw just want to make clear that Rajarshi and me are not the only ones allowed to review :)
14:17 egonw oh, and post commit review is more than welcome too...
14:17 egonw jkerssem: I left two comments on your JavaDoc patch on GitHub
14:18 egonw you should receive a notification from GitHub about that...
14:18 egonw otherwise, you can find them here:
14:18 egonw http://github.com/cdk/cdk/commit/1574​e422084a2ade37901ea32c340c9e85d31bb4
14:18 zarah egonw's link is also http://tinyurl.com/3xsmexf
14:20 jkerssem ah, thanks :)
14:20 jkerssem I feel a little proud, my very first patch, all grown up and reviewed :)
14:21 jkerssem I see what you mean by the long line length
14:21 jkerssem I'll remember to make them shorter from now on
14:21 egonw that would make me personally very happy :)
14:22 jkerssem since spreading happyness is one of my personal life goals, that makes me happy again :)
14:22 egonw :)
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