Camelia, the Perl 6 bug

IRC log for #cdk, 2010-09-03

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All times shown according to UTC.

Time Nick Message
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03:30 Topic for #cdk is now The Chemistry Development Kit (http://cdk.sf.net) | JUnit CDK 1.2.6: 15673, 76 fails + 15 errors (0.57%) | Logs at http://moritz.faui2k3.org/​irclog/out.pl?channel=cdk | CDK News Feed: http://friendfeed.com/rooms​/chemistry-development-kit
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09:07 maclean hi
09:07 zarah oh hai maclean
09:10 egonw hi maclean
09:10 maclean hi egonw
09:10 egonw can you skype call next monday?
09:11 maclean sure. I may have to find a quiet room here somewhere. maybe book a room just for me :)
09:11 maclean (here := EBI)
09:11 egonw ah
09:11 egonw you started with asad?
09:12 maclean yes, indeed.
09:12 * egonw is writing unit tests for cdk-jchempaint
09:12 maclean about 3 weeks ago - I've been cursing the IReaction and IMapping interfaces ever since...
09:12 maclean I saw! Excellent.
09:12 egonw ah, good
09:12 egonw yeah, I saw the bug report
09:13 maclean ?
09:13 egonw I still have a long list of TODOs
09:13 egonw but this is one of it
09:13 maclean :) You always do.
09:13 egonw mapping info getting lost when cloning, I think... ?
09:13 maclean ah, right.
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11:04 maclean wtf Blogger? why won't you let me use HTML entities?
11:35 egonw maclean: nice syntax highlighting!
11:35 maclean :)
11:36 maclean Apparently the guy (Alex Gorbatchev) has millions of downloaders of his script. If each one even have him £1, he'd be rich.
11:36 egonw maclean: I'm happy with IReactionList.removeAll()
11:37 egonw maclean: flattr ?
11:37 maclean flattr?
11:37 egonw http://flattr.com/
11:38 egonw I think that when my first google adsense check is in (one or two months from now), it will also be my last
11:38 egonw (not going to wait another five years for the next check)
11:38 egonw I think I'll try flattr
11:38 egonw good concept
11:38 maclean hmmm. looks interesting.
11:38 egonw ridiculous fees they ask (10%), but hoping that will go down
11:38 maclean hmm.
11:39 maclean I don't think I would be likely to make money from my blog somehow :)
11:40 maclean Although I did get one comment : "Nice post and this enter helped me alot in my college assignement. Thank you as your information."
11:40 maclean On a post about the equivalence classes in Adamantane, Diamantane, and Twistane!
11:40 maclean I hate to think what his college assignment was....
11:41 egonw :)
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12:15 egonw maclean: pushed new cdk-jchempaint patches to pele
12:15 egonw will now rerun Nightly
12:15 maclean ack
12:16 egonw and it's running...
12:16 egonw it will take some 15mins I guess
12:16 maclean sure.
12:17 maclean by the way - general advice : don't change the case of folders in a directory that is in a git repo. It can confuse git horribly.
12:18 maclean (that is, I did this, and it gave me a file that was un-revertable).
12:18 egonw :)
12:18 egonw you're on windows then?
12:18 maclean no, osx.
12:18 egonw oh, wow...
12:19 maclean but if I checked out the file or removed the file, or reset to HEAD, it was still in the working tree. clean didn't work either.
12:20 maclean probably there is some obscure (or obvious!) way to solve it, but a fresh checkout seemed best.
12:20 maclean Oh no.... it's still there!
12:23 maclean git checkout -- Test/data/R07326.rxn
12:23 maclean modified:   Test/Data/R07326.rxn
12:23 maclean git checkout -- Test/Data/R07326.rxn
12:23 maclean modified:   Test/data/R07326.rxn
12:23 maclean !!
12:24 egonw did not know os/x did not care about dir casing either...
12:24 maclean it should. I think.
12:26 egonw it's supposed to be freebsd based, so one would guess so
12:27 maclean exactly.
12:27 egonw nighlty report: http://pele.farmbio.uu.se/nightly-jcp/
12:28 zarah egonw's link is also http://tinyurl.com/ms4eer
12:28 maclean http://tapestryjava.blogspot.com/2010/0​7/git-on-mac-os-x-dont-ignore-case.html
12:28 zarah maclean's link is also http://tinyurl.com/2wwjokl
12:28 maclean "By default, Mac OS X uses a case insensitive file system,..."
12:28 egonw render3400100.00
12:28 maclean ok
12:28 egonw ouch
12:28 egonw bad, bad os/x
12:29 egonw JavaDoc: Summary: ERROR: 20 MINOR_ERROR: 3 WARNING: 3
12:29 egonw some false positives, though
12:30 maclean hmmm. do inner classes have to have cdk.module tags?
12:30 egonw no
12:30 egonw that a false positive
12:30 egonw fixed in master already
12:30 maclean ah, ok.
12:30 egonw same for git.hash
12:31 maclean thought so.
12:31 egonw will make a new 1.3.x release next week
12:31 egonw and then rebase cdk-jchempaint
12:31 egonw actually... I might cherry pick the patch
12:31 egonw gives better Nigthly reports...
12:32 egonw mom
12:32 egonw btw, it's patch d0703960c77e1ff12cc5d5774a65a5b004dd28e1 in master
12:33 maclean right.
12:33 egonw ok, pushed
12:33 egonw rerunning nightly
12:33 egonw (I love git :)
12:34 maclean :( I don't : " I prefer to keep my git repository in a case sensitive partition/image. I recommend you do the same, as there may be issues otherwise..."
12:35 egonw indeed
12:35 egonw interesting btw...
12:35 egonw how people with git/windows handle this
12:36 maclean lots of swearing?
12:36 egonw sounds familiar ;)
12:37 maclean there is also git config core.ignorecase true
12:39 egonw sounds relevant indeed
12:39 egonw it ensures that no one can make folders with the same name but different casing?
12:39 maclean possibly.
12:46 egonw http://pele.farmbio.uu.se/nig​htly-jcp/ojdcheck/render.html
12:46 zarah egonw's link is also http://tinyurl.com/39cd782
12:46 egonw 20 left... almost done :)
12:47 egonw and 6 PMD issues left: http://pele.farmbio.uu.se/n​ightly-jcp/pmd/render.html
12:47 zarah egonw's link is also http://tinyurl.com/2uzbwur
12:47 egonw two of which do not have to be fixed (complexity related...)
12:50 maclean yeah, cyclomatic complexity is a weird one. It can point to terrible code, or it could just be a natural consequence of a complex situation.
12:50 egonw true
12:50 egonw so, we keep the warning in, but leave fixing it optional
12:52 maclean I think so.
13:14 maclean On a website : "Ads by google" Title : "Physics online" Text : "Are you looking for a real psychic medium? Our employees can help you!" ?
13:17 egonw hahahaha
13:42 maclean right. I'm off. See you later.
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15:33 slyrus egonw: I couldn't get your jni-inchi branch to work. probably operator error on my part.
15:33 slyrus jnati seems like overkill for just finding a native .so/.dylib/.dll in a jar file, if you ask me
15:34 slyrus not to mention the fact that that seemed to be where the problem lay
15:37 egonw yeah, well, dunno about that... it's not my code, and do not know the exact way it functions...
15:37 egonw there was some discussion about that, actually... wrt to using it in an applet...
15:37 egonw so, what is my jni-inchi branch exactly?
15:38 egonw the support for the standard inchi in the cdk?
15:38 * egonw has many smaller projects and not sure what is being referred to right now :)
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16:57 slyrus egonw: I sent you an email with some limited thoughts on the jni-inchi stuff
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17:36 egonw slyrus: ok, just spotted it in my inbox
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20:14 Sienna7 hello
20:14 zarah oh hai Sienna7
20:14 Sienna7 hey erm i was wondering
20:14 Sienna7 if anyone knew any chemical engineers in cosmetics
20:14 Sienna7 ?
20:15 Sienna7 no?
20:15 Sienna7 lol
20:16 Sienna7 ok see yaa
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