Camelia, the Perl 6 bug

IRC log for #cdk, 2010-10-18

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All times shown according to UTC.

Time Nick Message
02:00 CIA-49 cdk: Rajarshi Guha cdk-1.4.x * r8ebda75 / src/test/org/openscience/cdk/fin​gerprint/FingerprinterTest.java : Actually put in a test - http://bit.ly/ccnYCm
02:00 CIA-49 cdk: Rajarshi Guha cdk-1.4.x * r5f1ec08 / src/main/org/openscience/cdk/qsar/des​criptors/molecular/FMFDescriptor.java : Updated Javadocs, since Egon is a nice guy :) - http://bit.ly/9rQR8r
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07:46 CIA-49 cdk: Egon Willighagen cdk-1.4.x * rf3bb3d7 / (4 files in 4 dirs):
07:46 CIA-49 cdk: Revert "Updated MF manipulator to properly evaluate total mass and generate
07:46 CIA-49 cdk: formula string correctly, even when there are multiple isotopes of the same
07:46 CIA-49 cdk: element. Added unit test. Simplified molecular formula to properly use the
07:46 CIA-49 cdk: isotopes map as an actual map"
07:46 CIA-49 cdk: This reverts commit 1e54d9368b5bf7856c8a14ba2958a9ba5bb31051. - http://bit.ly/96K25x
07:46 CIA-49 cdk: Egon Willighagen cdk-1.4.x * r1128a53 / (2 files in 2 dirs):
07:46 CIA-49 cdk: Revert "Updated molecular formula to use the new equals method from Isotope. This methods checks for equality of two instances using symbol, mass num, exact mass and natural abundance"
07:46 CIA-49 cdk: This reverts commit e280bc2442ce409c9d831ec4b513d84ecb640feb. - http://bit.ly/bb8HXv
07:46 CIA-49 cdk: Egon Willighagen cdk-1.4.x * r79c0868 / (4 files in 4 dirs):
07:46 CIA-49 cdk: Revert "Updated isotope to have proper equals and hashCode methods"
07:46 CIA-49 cdk: This reverts commit 4945c3f28ddef45f98b4d43f35dbdab7e6a7d942. - http://bit.ly/c9qYrj
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09:00 jonalv hi
09:00 zarah saluton jonalv
09:00 jonalv is this where I make cdk related complaints?
09:06 jonalv Access restriction: The type CMLWriter is not accessible due to restriction on required project org.openscience.cdk.libiocml
09:06 jonalv I mean, how is this supposed to work?
09:10 jonalv also, btw why is org.openscience.cdk.io.CMLWriter located in the org.openscience.cdk.libiocml bundle and not in org.openscience.cdk.io? That is a bit confusing if you ask me...
09:10 jonalv maybe it should be named org.openscience.cdk.libiocml.CMLWriter instead?
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10:10 maclean hello
10:10 zarah ni hao maclean
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10:27 maclean egonw : "I would like to stress that for the past 15 years (at least) a general solution to this problem has been around..." - CIP?
10:28 maclean (from your comment on Peter's blog)
10:29 maclean Ugh. And those (possibly) daylight images with a black background are horrible.
10:31 egonw solution is a 3D model
10:32 egonw why mess with 2D drawings if the are unclear and you can do 3D
10:33 maclean oh, right.
10:33 maclean also, the damn NCBI 3D viewer (mac version) doesn't work on my mac :(
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20:42 CIA-49 cdk: vedina cdk-1.4.x * ra40ef3a / src/test/org/openscience/cdk/io/it​erator/IteratingMDLReaderTest.java :
20:42 CIA-49 cdk: test for streams returning false on ready()
20:42 CIA-49 cdk: Signed-off-by: Egon Willighagen <egonw@users.sourceforge.net> - http://bit.ly/9K2GsR
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21:45 CIA-49 cdk: Egon Willighagen cdk-1.4.x * rb143a78 / javadoc.xml : Removed merge artefact - http://bit.ly/9hOjKb
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23:56 CIA-49 cdk: Egon Willighagen cdk-1.4.x * r2f74f0e / (34 files):
23:56 CIA-49 cdk: Overwrite tests from AbstractChemObject to ensure that no change events are thrown when properties are changed, which was fixed in June in patch 2fe119c3a874dabb9bfb66ea2adbaaa6b2e6ed5d
23:56 CIA-49 cdk: Signed-off-by: Rajarshi Guha <rajarshi.guha@gmail.com> - http://bit.ly/9GBh1T

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