Camelia, the Perl 6 bug

IRC log for #cdk, 2011-11-01

| Channels | #cdk index | Today | | Search | Google Search | Plain-Text | summary

All times shown according to UTC.

Time Nick Message
04:23 egonw_ joined #cdk
04:50 sneumann joined #cdk
05:34 CIA-38 cdk: Egon Willighagen 334-14x-r1.4.5 * rd6b8c8e / src/test/org/openscience/cdk/​smiles/SmilesParserTest.java : Added unit test to make sure atom types are also perceived when aromaticity from SMILES is kept - http://git.io/1-PMOg
05:34 CIA-38 cdk: Egon Willighagen 334-14x-r1.4.5 * r2413197 / src/main/org/openscience/cd​k/smiles/SmilesParser.java : Perceive atom types also when aromaticity from the SMILES is kept - http://git.io/QqC_9w
05:34 CIA-38 cdk: Egon Willighagen 334-14x-r1.4.5 * r68536e1 / build.xml : Changed how data files are copied: copy those specified in the src/META-INF/*.datafiles (fixes #3430342) - http://git.io/fI_iZQ
05:34 CIA-38 cdk: Egon Willighagen 334-14x-r1.4.5 * ref5586b / build.props : Release 1.4.5 - http://git.io/zTIohg
05:34 CIA-38 cdk: Egon Willighagen 334-14x-r1.4.5 * r1387b7b / src/main/org/openscience/cdk/rend​erer/visitor/AWTDrawVisitor.java : Use a minimal stroke width in the AWT output (fixes #3295256) - http://git.io/J9xPQA
05:34 CIA-38 cdk: Egon Willighagen cdk-1.4.x * rd6b8c8e / src/test/org/openscience/cdk/​smiles/SmilesParserTest.java : Added unit test to make sure atom types are also perceived when aromaticity from SMILES is kept - https://github.com/cdk/cdk/commit/d6b​8c8ebb53c3ec1afb3a7fdd17bf9e3665baa2a
05:34 CIA-38 cdk: Egon Willighagen cdk-1.4.x * r2413197 / src/main/org/openscience/cd​k/smiles/SmilesParser.java : Perceive atom types also when aromaticity from the SMILES is kept - https://github.com/cdk/cdk/commit/241​3197568f6edbc7a92e2b17cff2aa3fbe19bc2
05:34 CIA-38 cdk: Egon Willighagen cdk-1.4.x * r68536e1 / build.xml : Changed how data files are copied: copy those specified in the src/META-INF/*.datafiles (fixes #3430342) - https://github.com/cdk/cdk/commit/685​36e1a4ba51ed2b0d2fd3965edc4515de85970
05:34 CIA-38 cdk: Egon Willighagen cdk-1.4.x * ref5586b / build.props : Release 1.4.5 - https://github.com/cdk/cdk/commit/ef5​586b10a69de643fd5c697948aebf0c1848c22
05:34 CIA-38 cdk: Egon Willighagen cdk-1.4.x * r1387b7b / src/main/org/openscience/cdk/rend​erer/visitor/AWTDrawVisitor.java : Use a minimal stroke width in the AWT output (fixes #3295256) - https://github.com/cdk/cdk/commit/138​7b7b0f5735da3349f2c96b2751d074d6c058b
06:01 jbrefort joined #cdk
06:26 sneumann joined #cdk
06:39 s9asad joined #cdk
06:39 s9asad Good morning!
06:39 egonw_ hi s9asad
06:40 egonw s9asad: did you see the bug report from yesterday for SMSD?
06:41 s9asad joined #cdk
06:41 egonw s9asad: did you see the bug report from yesterday for SMSD?
06:42 s9asad joined #cdk
06:43 s9asad Hi egonw
06:43 s9asad yes I was just reading that
06:43 s9asad sorry my client my frozen on my phone
06:45 s9asad yes so I will need an example to check it
06:46 s9asad I guess that bug might me on the old SMSD version which is in the CDK
06:46 egonw also, did you see Ola's request for example code for typical examples, focusing on what you think is the best Algo to use for which situation?
06:46 egonw well, that would make it a valid bug, I guess :)
06:46 egonw ok, got to sign off, and relocate to work now... bbl
06:46 s9asad okay
06:51 s9asad I am not sure about the comments in the bug..I need concrete example…the SMSD version in the CDK does change the molecule which performing MCS search and one needs to get the modified mols and the returned index corresponds to the modified mols….
06:54 s9asad left #cdk
07:46 egonw joined #cdk
08:00 CIA-38 cdk: Egon Willighagen cdk-1.4.x * r46ccc71 / build.props : Bug fixing towards 1.4.6 - http://git.io/aGLQjg
08:05 mgerlich joined #cdk
08:13 egonw joined #cdk
08:14 Gpox joined #cdk
08:44 egonw joined #cdk
08:48 jonalv joined #cdk
09:06 jonalv joined #cdk
09:08 egonw joined #cdk
13:03 egonw joined #cdk
13:50 jonalv egonw: let's talk here... SilenChemObjectbuilder? How does it differ from the NoNotify one? I thought the whole point with the NoNotify was that it was sort of silenbt...
13:50 egonw yes, so does the Silent one
13:50 egonw but the later is faster... read:
13:51 jonalv egonw: as a side not I don't seem to have it. Should it be in 1.4.x?
13:51 egonw http://chem-bla-ics.blogspot.com/20​11/07/data-nonotify-or-silent.html
13:51 egonw yeah, you might want to do a rebase
13:51 egonw or, easier...
13:51 jonalv but I thought I just did
13:51 jonalv :(
13:51 egonw use git format-patch
13:52 egonw and apply your patches to a fresh branch...
13:52 egonw oh...
13:52 egonw maybe GitHub refused your push?
13:52 egonw and is that why I see a weird JavaDoc first line?
13:52 jonalv I am not sure, maybe I pulled from the wrong location before rebase
13:53 egonw note the last plot in that log post...
13:53 jonalv nah I doubt git would change the file on a refused push
13:53 egonw it would not
13:55 jonalv egonw: If I rebase and fix this the comments fields will be lost for rajarshi. This is becomming complicated. Is there no better way to do this?
14:04 egonw he can still comment on that page...
14:04 jonalv even if I do a forced rebase on that code? Are you sure?
14:08 egonw you'll know what he is commenting on...
14:16 jonalv hm I will wait some for his comments I think. That should be better
14:16 jonalv better safe thena sorry? :)
14:17 egonw guess so
14:18 egonw or go give it a different branch name
14:18 jonalv yea good idea, will do that if it takes too long :)
16:08 sneumann joined #cdk
16:29 CIA-38 cdk: Nina Jeliazkova cdk-1.4.x * r5e828f5 / src/main/org/openscience/cdk/graph/inv​ariant/EquivalentClassPartitioner.java :
16:29 CIA-38 cdk: Fix to use interfaces as argument instead of classes
16:29 CIA-38 cdk: Signed-off-by: Egon Willighagen <egonw@users.sourceforge.net> - http://git.io/1GMtFQ
16:43 sneumann_ joined #cdk

| Channels | #cdk index | Today | | Search | Google Search | Plain-Text | summary