Camelia, the Perl 6 bug

IRC log for #cdk, 2012-01-25

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All times shown according to UTC.

Time Nick Message
05:33 egonw joined #cdk
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09:29 jonalv egonw: ping
09:29 egonw give me 5 minutes
09:34 egonw ok, what's up?
09:35 jonalv egonw: Can you trigger a rebuild of that nightly?
09:36 egonw done
09:36 egonw will take up to 45 minutes to finish
09:36 jonalv egonw: really? that's long...
10:08 egonw yeah, pele seems rather busy with other things nowadays :)
10:08 jonalv we should move to the new one eral soon now I think
10:09 egonw agreed, and keep the old one around just in case, but indeed...
10:10 jonalv well it's running at about 170% cpu so not too many other things competing...
10:21 egonw it's done now
10:33 jonalv egonw: hm, no change. Strange...
10:35 jonalv web browser cashe...
10:35 jonalv *chache
10:35 jonalv hm
10:36 jonalv egonw: okey, are there more things I should do before sending a pull request?
10:37 egonw let me see...
10:37 egonw http://pele.farmbio.uu.se/nightly-j​onalv/test/result-fingerprint.html
10:38 egonw you could have a look into why it complains about those missing test methods...
10:38 egonw if you changed getRawFingerprint() stuff...
10:38 egonw http://pele.farmbio.uu.se/night​ly-jonalv/pmd/fingerprint.html
10:39 egonw complexity warnings are fine...
10:39 egonw you might want to file bug reports, btw, if you feel some else should fix something!
10:39 egonw e.g. in PubchemFingerprinter
10:40 egonw similarity.Tanimoto is yours?
10:40 egonw variables should be understandable without context
10:40 egonw 'p' is not really
10:40 egonw in DistanceMoment
10:41 egonw (not sure what you added/changed in your patches(
10:41 egonw ))
10:41 egonw compare with the report for regular master
10:56 jonalv egonw: hm, this seems like a lot
10:56 egonw all: http://blogs.openaccesscentral.com/blogs/ccblog​/entry/journal_of_cheminformatics_accepted_for
10:56 zarah egonw's link is also http://tinyurl.com/7t5omdg
10:56 egonw this is great news!
10:56 egonw this means all JChemInf papers will now be indexed for Web of Science!
10:57 jonalv nice
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12:50 CIA-66 cdk: Rajarshi Guha master * r3005193 / (72 files in 9 dirs): Merge branch 'mopac' - http://git.io/_WNd7Q
13:21 CIA-66 cdk: Egon Willighagen cdk-1.4.x * r1bb844d / src/test/org/openscience/cdk/tools/manip​ulator/AtomContainerComparatorTest.java : Updated unit test for commit #3093241, where null's are always larger than an actual object - http://git.io/wL1PJQ
13:34 egonw jonalv: where are you current set of patches?
13:34 egonw I want to browse them for general code clean up :)
13:35 jonalv egonw: https://github.com/jonalv/cdk/tree/REBASED
13:36 egonw right, thanx
13:37 egonw (and backport them to cdk-1.4.x :)
13:37 jonalv egonw: oh, well there are api changes in here...
13:38 egonw not all
13:38 * egonw is thinking of patches like: https://github.com/jonalv/cdk/commit/0b​21c35efbde0694e3ee3475f2992d112e7755a7
13:38 jonalv ah
13:50 egonw grpmh... sadly, this patch does not apply :(
13:58 egonw jonalv: you seem quite right... hard to isolate things...
13:59 jonalv egonw: that's too bad actually...
13:59 jonalv but, maybe these things aren't so important to backport?
14:00 egonw no
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