Camelia, the Perl 6 bug

IRC log for #cdk, 2013-08-05

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All times shown according to UTC.

Time Nick Message
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14:16 commitbot [cdk] johnmay pushed 1 new commit to master: http://git.io/wOLRGQ
14:16 commitbot cdk/master fb59fae John May: Run junit as headless.
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15:44 commitbot [cdk] egonw pushed 3 new commits to master: https://github.com/cdk/cdk/comp‚Äčare/fb59faef4147...06e722494168
15:44 commitbot cdk/master c9c965d John May: Missing dependency for test-qsarcml....
15:44 commitbot cdk/master 5bd0f1d John May: Resolves two long standing errors in 'cdk-extra'. The method should throw an exception when one tries to attach to an invalid atom number (e.g. 7-chlorohexane). The existing error was using the ParseException constructor incorrectly and thus would throw an error. The constructor is for generating error messages to do with syntax. As this is a semantic error the constructor did not function as intended. Simply replacing the
15:44 commitbot cdk/master 06e7224 John May: Fail test instead of throwing an exception....
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15:49 commitbot [cdk] egonw pushed 1 new commit to cdk-1.4.x: http://git.io/Y_Kgfg
15:49 commitbot cdk/cdk-1.4.x 4f5b704 John May: Resolves two long standing errors in 'cdk-extra'. The method should throw an exception when one tries to attach to an invalid atom number (e.g. 7-chlorohexane). The existing error was using the ParseException constructor incorrectly and thus would throw an error. The constructor is for generating error messages to do with syntax. As this is a semantic error the constructor did not function as intended. Simply replacing
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15:57 commitbot [cdk] egonw pushed 1 new commit to master: http://git.io/isgnsw
15:57 commitbot cdk/master ac5a3e7 John May: Exact mass and natural abundance is not preserved on reading/writing CML. As these attributes are boxed primitives they can be null and throw an exception when unboxed by 'assertEquals'. Before checking the values the attributes are not checked for nullity....
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16:07 commitbot [cdk] egonw pushed 2 new commits to cdk-1.4.x: http://git.io/T_-8cQ
16:07 commitbot cdk/cdk-1.4.x 5d8f2f8 John May: When a reaction references a molecule which is unknown - automatically create one with that Id. This happens when the set of molecules is defined after the reaction. This commit resolve the test in error 'CML2Test. testBug2697568'...
16:07 commitbot cdk/cdk-1.4.x 1e0cfdb Egon Willighagen: Backport for cdk-1.4.x: use IMolecule in IMoleculeSet...
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16:09 commitbot [cdk] egonw pushed 1 new commit to master: http://git.io/MfWkLQ
16:09 commitbot cdk/master a6c96d8 John May: When a reaction references a molecule which is unknown - automatically create one with that Id. This happens when the set of molecules is defined after the reaction. This commit resolve the test in error 'CML2Test. testBug2697568'...
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16:27 commitbot [cdk] egonw pushed 1 new commit to cdk-1.4.x: http://git.io/OqhRKg
16:27 commitbot cdk/cdk-1.4.x c29a6b4 John May: Resolves unit test failure (previous commits). When a double bond is found and there are no 2D coordinates (e.g. unspecified configuration) then return then return '0' for the configuration value....
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16:28 commitbot [cdk] egonw pushed 4 new commits to master: http://git.io/FLPKwQ
16:28 commitbot cdk/master 49932b9 John May: Using typed list and index (so we can print a better failure message)....
16:28 commitbot cdk/master 1a5c89b John May: Remove stdout and catch exception to fail the test instead of returning in error....
16:28 commitbot cdk/master bdb5c39 John May: Moves assertions on non-null bond length to the same loop. Also puts the getPoint3d() null test before the bond length check. If there is a null atom the bond length check will throw an NPE - better to fail on this....
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17:40 commitbot [cdk] johnmay pushed 1 new commit to cdk-1.4.x: http://git.io/f3gNgQ
17:40 commitbot cdk/cdk-1.4.x a92d226 John May: Exact mass and natural abundance is not preserved on reading/writing CML. As these attributes are boxed primitives they can be null and throw an exception when unboxed by 'assertEquals'. Before checking the values the attributes are not checked for nullity....
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20:25 commitbot [cdk] egonw pushed 1 new commit to cdk-1.4.x: http://git.io/dvfxzg
20:25 commitbot cdk/cdk-1.4.x feb60c3 Egon Willighagen: Release 1.4.19...
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20:28 commitbot [cdk] egonw tagged cdk-1.4.19 at cdk-1.4.x: http://git.io/OAC3vw
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20:28 commitbot [cdk] johnmay pushed 1 new commit to master: http://git.io/Qav6ig
20:28 commitbot cdk/master a621922 Egon Willighagen: If the proper behavior is to throw an exception, then the unit test should expect it...
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20:37 commitbot [cdk] egonw pushed 1 new commit to cdk-1.4.x: http://git.io/KRd3pQ
20:37 commitbot cdk/cdk-1.4.x 68db314 Egon Willighagen: Open for more fixing...
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20:40 commitbot [cdk] johnmay pushed 1 new commit to cdk-1.4.x: http://git.io/cUQfAQ
20:40 commitbot cdk/cdk-1.4.x a654ea4 Egon Willighagen: If the proper behavior is to throw an exception, then the unit test should expect it...
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