Perl 6 - the future is here, just unevenly distributed

IRC log for #cdk, 2014-01-23

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All times shown according to UTC.

Time Nick Message
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07:55 commitbot [cdk] egonw pushed 2 new commits to master: http://git.io/5W3TQg
07:55 commitbot cdk/master 9820d2e John May: Abstract test classes should be abstract....
07:55 commitbot cdk/master 0b17d56 John May: Test class should have 'Test' somewhere in the class name....
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08:05 commitbot [cdk] egonw pushed 5 new commits to master: http://git.io/fJ1cvg
08:05 commitbot cdk/master 3f4eafa John May: Ensure stereo elements assertions are in the correct order....
08:05 commitbot cdk/master ab53002 John May: Silent objects do not notify on these methods and the tests need to be overridden....
08:05 commitbot cdk/master f67e116 John May: Fixing test errors (atom indices were wrong)....
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08:19 commitbot [cdk] egonw pushed 3 new commits to master: http://git.io/uRTvsw
08:19 commitbot cdk/master 2069f5e John May: The test for vinylogous ester is not a bug but a limitation of the SMARTS used to match functional group. The test is now ignored as it will always fail. Additionally the fingerprint can not be used to filter substructures and we must override testBug706786 from the abstract superclass.
08:19 commitbot cdk/master f5b77a3 John May: Correct tests for accepting IAtomContainers....
08:19 commitbot cdk/master 7bc38f8 John May: Annoyingly the AtomDiff reports there is a difference in the atom ID... when that's not what we are testing. As CML adds ids to atoms differences were being incorrectly reported. Adding an ID before we write the file resolves all but 1 failure....
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08:34 commitbot [cdk] egonw pushed 6 new commits to master: http://git.io/JpJlVw
08:34 commitbot cdk/master d160a65 John May: CML can't round trip exact mass at the moment....
08:34 commitbot cdk/master ac428fd John May: More readers that didn't correctly test of accepting IChemFile....
08:34 commitbot cdk/master bc3e1e5 John May: Correct resource path....
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20:00 commitbot [cdk] egonw pushed 7 new commits to master: http://git.io/KxA9pA
20:00 commitbot cdk/master acb13ec John May: ElementRule needs a builder to create it's parameters. The parameter are null to start with and then created once a builder was available (i.e. when validated)....
20:00 commitbot cdk/master 73ecc10 John May: Ensure atom types are set before saturate is invoked....
20:00 commitbot cdk/master 459d2a7 John May: Clone the atom and container before processing - a test indicates there should be no modifications....
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20:53 commitbot [cdk] egonw pushed 7 new commits to master: http://git.io/OJ0pmw
20:53 commitbot cdk/master 26f102d John May: Remove print statements....
20:53 commitbot cdk/master 74e404a John May: Incorrect chem object reader....
20:53 commitbot cdk/master 98718ce John May: Although we do still need a way handle untyped atoms safely - the number of matches does not change in this test and rather than fail we skip over these molecules....
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21:04 commitbot [cdk] egonw pushed 4 new commits to master: http://git.io/SMQnag
21:04 commitbot cdk/master 61f09c9 John May: Correct resource paths....
21:04 commitbot cdk/master 21a7703 John May: ICrystal extends IAtomContainer... so the second condition was never being checked. A left over gotcha from the removal of IMolecule....
21:04 commitbot cdk/master 8b86cd3 John May: Silly test but now resolved - when given a null molecule a null collection is returned....
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