Perl 6 - the future is here, just unevenly distributed

IRC log for #cdk, 2014-07-16

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All times shown according to UTC.

Time Nick Message
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01:48 Topic for #cdk is now The Chemistry Development Kit (http://cdk.sf.net) | JUnit CDK 1.2.7: 15690, 76 fails + 15 errors (0.58%) | Logs at http://moritz.faui2k3.org/irclog/out.pl?channel=cdk | CDK News Feed: http://friendfeed.com/rooms/chemistry-development-kit
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09:29 commitbot [cdk] johnmay pushed 3 new commits to master: http://git.io/HoOpDQ
09:29 commitbot cdk/master 3936c37 Egon Willighagen: Use the @cdk.cite mechanism of citing papers...
09:29 commitbot cdk/master 5247f59 Egon Willighagen: Removed unused imports and code...
09:29 commitbot cdk/master 8fea909 Egon Willighagen: Very minor JavaDoc improvements...
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12:21 commitbot [cdk] egonw pushed 2 new commits to master: http://git.io/A-9pYg
12:21 commitbot cdk/master cf00f01 John May: These atoms need to be recognised for creating extended tetrahedral (allene) stereo elements....
12:21 commitbot cdk/master 1531311 John May: Additional commit to fix still failing test. The previous example was hitting a heuristic in the code, where there is more than one hydrogen the type is automatically set to non-stereogenic. This was the case for the terminal atoms in this extended tetrahedral example....
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18:26 commitbot [cdk] egonw pushed 4 new commits to master: http://git.io/ZKboow
18:26 commitbot cdk/master 4eab06d John May: MMFF resource files...
18:26 commitbot cdk/master a55c15f John May: MMFF aromatic types are assigned by updating the existing symbolic types....
18:26 commitbot cdk/master 9125e9d John May: MMFF atom type assignment, unit and validation tests. The atom types are assign using simple SMARTS patterns and the previously implemented aromatic mapping. This provides correct assignment of all symbolic types in the validation suite....
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19:31 commitbot [cdk] egonw pushed 3 new commits to master: http://git.io/03VbFA
19:31 commitbot cdk/master 9dedcca John May: The expected value is for chloropropane and not chlorobutane. The SMILES 'CCCCl' was mistakenly misread as 'CCCCCl' in commit db9a311....
19:31 commitbot cdk/master 0cf2c60 John May: Inline method invocations and avoid using reflection (error prone)....
19:31 commitbot cdk/master 813637a John May: Remove test reporting "This descriptor is not tested". Test coverage is reported using jacoco. The abstract descriptor test is still running some useful assertions (i.e. hydrogen representation) and so we leave the class in place....
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19:36 commitbot [cdk] egonw pushed 2 new commits to master: http://git.io/vTQrAg
19:36 commitbot cdk/master 6999951 John May: The SMARTS '*' should match any atom, include hydrogen. Hydrogen was not previously matched due to confussion over explicit-H matching in SMARTS....
19:36 commitbot cdk/master 29d9a75 John May: Resolve unit test regressions. Comment added to note the original bug report was wrong....
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19:42 egonw hi steinbeck!
19:43 steinbeck Hi egonw
19:43 steinbeck Greetings from Edmonton, Canada :)
19:43 egonw which side of Canada is that?
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19:43 commitbot [cdk] egonw pushed 2 new commits to master: http://git.io/cbKPgA
19:43 commitbot cdk/master bc0312e John May: ChemModel is also added elsewhere leading to a regression....
19:43 commitbot cdk/master 58d5b8a John May: Only create a new Reaction convention if the current convention isn't already CMLR....
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19:44 * egonw is googling
19:46 egonw wow.. in the middle of nowhere...
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20:19 egonw steinbeck: unstable connection? anyways... what's in Edmonton?
20:30 * egonw is going offline
20:30 egonw ttl
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21:18 commitbot [cdk] johnmay pushed 2 new commits to master: http://git.io/PjYgUw
21:18 commitbot cdk/master 3fbab65 John May: Revert "Circumvent '*' not matching explicit hydrogens."...
21:18 commitbot cdk/master fdad832 John May: Missed assertion change due to '*' behaviour.
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