Perl 6 - the future is here, just unevenly distributed

IRC log for #opentreeoflife, 2014-06-22

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All times shown according to UTC.

Time Nick Message
00:58 josephwb joined #opentreeoflife
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01:56 kcranstn @jimallman - you there?
02:06 kcranstn Getting some strange errors when trying to view studies in the curator app
02:06 kcranstn SyntaxError: Using //@ to indicate sourceMappingURL pragmas is deprecated. Use //# instead bootstrap-tagsinput.min.js:6
02:06 kcranstn Error: http://devtree.opentreeoflife.org/curator/static/js/bootstrap-tagsinput.min.js is being assigned a //# sourceMappingURL, but already has one
02:06 kcranstn TypeError: mutating the [[Prototype]] of an object will cause your code to run very slowly; instead create the object with the correct initial [[Prototype]] value using Object.create d3.v3.min.js:3
02:06 kcranstn Use of getPreventDefault() is deprecated.  Use defaultPrevented instead. jquery.js:2
02:06 kcranstn TypeError: viewModel.nexml['^ot:dataDeposit'] is undefined
03:09 jimallman kcranstn: thanks for the heads-up! cleaning up the dataDeposit check now...
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03:19 jimallman_ @kcranstn: my bad, i forgot to add an empty ot:dataDeposit element if it isn’t found when loading the study. please try again and let me know if you have any problems.
03:21 kcranstn will do
03:22 kcranstn which server did you update? still getting the error on devtree
03:22 kcranstn (and this is the only instance, right?)
03:43 jimallman sorry, was chasing the Dev Resources page. Yes, devtree is the only live instance. Clear client-side cache, perhaps?
03:44 jimallman kcranstn: ^ what study / URL are you trying to use?
03:45 kcranstn ah, working now
03:46 kcranstn any chance you can push the new resources page before monday morning?
03:46 kcranstn (which is when I give my talk?)
03:46 jimallman sure! the Dev Resources page is all cleaned up, there’s just the question of the “above” link (referenced in GH issue)
03:46 jimallman https://github.com/OpenTreeOfLife/opentree/pull/326
03:47 kcranstn commented there
03:48 jimallman ok, checking now..
03:48 jimallman Also, note that all these changes are going to the ‘master’ branch, not to ‘production’. in other words, these changes will show up on devtree but not on tree.opentreeoflife.org… We haven’t really talked about how/when to promote changes to production..
03:48 kcranstn I know…
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03:50 jimallman josephwb: josephwb!
03:51 jimallman (ain’t no party like a late-night IRC party)
03:51 kcranstn I got some panicked talk prep going on here in NC
03:51 jimallman kcranstn: can i help?
03:51 kcranstn you have been :)
03:52 jimallman (meanwhile, the new Dev Resources page is up on devtree. one less thing to worry about)
03:52 kcranstn so. much. cleaner.
03:52 jimallman :D
03:53 kcranstn let’s pull request that to production branch and tag @towodo
03:53 jimallman fyi - i’m not totally clear on how the Google Search thingie is configured. i just kept the settings that jar provided. it doesn’t find taxa in the d3 visualizations, but it does find matches on GitHub.
03:54 jimallman re: pull requests.. this is where git can be tricky. it won’t be a pull request of just these changes, but also of all upstream changes in the graph.
03:54 kcranstn righ
03:54 kcranstn right
03:55 jimallman personally, i’d be pretty happy to bring everything in dev up to production at this point. but maybe there’s some goofy stuff in there..?
03:55 jimallman or dependencies i’m not thinking of..
03:55 jimallman that said, we can make a patch of just one commit and pass it that way. clunky, but more precise.
03:55 kcranstn sure
03:56 jimallman i’ll start a thread with jar/towodo (cc: you) to discuss what changes you want to promote, and how he wants to handle it.
03:56 kcranstn there is less panic now, because the science paper was rejected
03:57 kcranstn so now we can ditch dev
03:57 jimallman !  i didn’t realize
03:58 kcranstn yesterday
03:58 jimallman sorry to hear it. is that definitive, or can you re-submit with changes?
03:58 kcranstn we will re-submit somewhere else
03:59 * jimallman nods
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