Perl 6 - the future is here, just unevenly distributed

IRC log for #opentreeoflife, 2014-06-24

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All times shown according to UTC.

Time Nick Message
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10:59 kcranstn @jimallman - can we use the same logic on the references page that the curator is using to display the “this study has changed
10:59 kcranstn message
11:02 jimallman the curator has loaded the full Nexson from phylesystem-api, so it has the current SHA. Maybe, if we can add current SHA to oti, we could get the same effect (or even pre-calculate a boolean ‘usedInLastSynthesis’, if the test is more complex than I’ve made it)
11:03 kcranstn ok, then I think we can leave the two download links
11:10 * jimallman is heading to iEvoBio!
11:10 kcranstn right! see you soon
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15:35 josephwb jimallman kcranstn mtholder blackrim: how do we know the treeids from studies entered in the new curator app?
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16:32 josephwb kcranstn: how do we know the treeids from studies entered in the new curator app?
16:35 kcranstn they are in the URL, or in the nexson
16:36 josephwb not in url
16:36 josephwb need to see these in the curator
16:36 kcranstn ah, tree ids, not study ids
16:36 kcranstn sorry
16:38 josephwb yeah
16:38 kcranstn why do you need them in the curator app?
16:38 josephwb e.g. Dail is compiling a list of new studies, but can't find the treeids anywhere
16:39 josephwb treemaching requires these as input
16:39 kcranstn doesn’t it just need to know which tree is preferred?
16:39 josephwb even if study only has one tere
16:39 josephwb tree
16:39 josephwb arbre
16:42 josephwb no, that "preferred" field is new. treemachine doesn't recognize it
16:42 kcranstn it should, shouldn’t it?
16:43 josephwb yes?
16:43 kcranstn trying to move away from using external lists of trees rather than direct communication between curator and treemachine
16:44 kcranstn rather than = in favour of
16:45 josephwb stephen's thought: how can we point people to a specific tree?
16:46 josephwb preferred or otherwise?
16:46 josephwb they must have ids somewhere, right?
16:46 kcranstn in the nexsons
16:47 kcranstn good point about being able to link to a specific tree
16:47 kcranstn github issue for this
16:47 kcranstn please make one
16:47 josephwb will do
16:47 kcranstn we have the ids, and people should be able to refer to trees
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19:07 josephwb blackrim: http://xkcd.com/1205/
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