Perl 6 - the future is here, just unevenly distributed

IRC log for #opentreeoflife, 2014-06-26

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All times shown according to UTC.

Time Nick Message
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14:20 towodo https://docs.google.com/document/d/1Jf8t8JmN7o8gJQf6IVTvZAiBQQeq3U5VOmpUcygLNFM/edit
14:22 josephwb towodo: my email answered your question?
14:23 towodo yes, thanks.  fix already incorporated and ready for Anne to use
14:23 josephwb great
14:23 towodo may I recommend you learn to use the Pattern and Matcher classes… they will greatly improve performance any time you use regexps
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15:03 josephwb hey hdliv
15:04 hdliv hi.  now I know where you are all day.  we can ask microbial questions :P
15:04 josephwb NO
15:05 josephwb hdliv: you will want to Bookmark this
15:05 blackrim josephwb: I am confused by the edit to pgloadind about the sHA. seems like it is off now
15:05 josephwb huh?
15:05 josephwb not working
15:05 josephwb ?
15:06 blackrim i count 5 args if you aren't testing and 6 if you are but it says 6 and 7 now
15:06 blackrim (and it doesn't seem to work)
15:06 josephwb erg. sorry if i broke it. i ran it without a SHA, but with "test", and it ran, so i figured that check was out of date
15:07 josephwb i can fix it
15:07 blackrim i got it
15:07 blackrim it is all good now
15:07 blackrim i will push
15:07 josephwb ok
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15:07 josephwb sorry about that
15:07 blackrim no problems.
15:08 josephwb if you just want to pgloadind test an individual nexson, can you give it a dummy SHA?
15:08 blackrim sure, just needs something there
15:09 josephwb i just have scripts that used to do the check, but they broke with the SHA addition
15:09 josephwb ok
15:09 josephwb good to know
15:09 josephwb blackrim: Ashley's apparently doesn't open 'til 11:30 or 12:00. Wha?
15:10 blackrim hm, didn't know that. no breakfast there i guess! (and no game)
15:10 josephwb yeah
15:10 josephwb and no grumbler
15:10 josephwb i'll try again at 11:30
15:10 blackrim too bad!
15:13 blackrim i didn't get any different results from moving the taxonomy tree from the last to the first tree. weird.
15:16 MicrobesStink As a real (and totally NOT fake) microbial biologist, I just want to apologize as a community for not getting our taxonomic shit together. You guys rule, we are lame.
15:16 josephwb MicrobesStink: don't worry about it. we forgive you.
15:17 MicrobesStink Man, I wish I studied something cool like birds.
15:17 josephwb Maybe someday.
15:19 josephwb blackrim: I don't know what is going on with this single tree analysis
15:19 josephwb 2 hours now
15:19 blackrim that is really bizarre. well i have treemachine outputting a more pruned taxonomy tree for the input. we will see how that goes (running now with mammals)
15:20 josephwb good
15:21 josephwb linux people: ever get a popup "System program problem detected\nDo you want to report the problem now?"
15:21 josephwb never saw it before MLS
15:22 blackrim josephwb: ok the more pruned tree is no help. it is a non monophyly thing though. so i think it will need to be a posttree processing thing
15:22 blackrim i will let your tests finish and go from there
15:22 josephwb crap
15:42 towodo jimallman, we need to make the host name switcheroo dev -> tree at some point (not right now)
15:42 hdliv IMG_4756.jpeg
15:43 towodo ?
15:43 jimallman towodo: indeed
15:43 towodo maybe we should schedule a time.  the system will have to be down for a few minutes
15:44 towodo jimallman, how about monday morning? what would be a good time?
15:46 jimallman any time Monday is good for me.
15:47 jimallman (maybe during the s/w hangout, for added excitement)
15:47 towodo i want to do it as early as possible, to avoid downtime during busier periods
15:48 towodo so the question is when do you start work… I'm up early
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15:58 josephwb1 hdliv: don't think you can share images here.
16:00 MicrobesStink Hey non-microbe guys: how do you make a tree?
16:02 josephwb1 MicrobesStink: Word + MSPaint, mostly
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16:14 jimallman towodo: hm, let’s say 8:30 Eastern? i suspect there’s a lot of preparation we can do ahead of time (register aps with the new domain name at GitHub, etc)
16:14 jimallman do you have a punchlist? if not, i’ll start one..
16:15 towodo 8:30am is fine.  I don't have a punchlist; the main thing for me is the DNS tweaking. Other than that I think it's config file and certificate stuff.
16:16 towodo I want to warn folks on the opentreeoflife list that it's going to be down, that's why I want to set a time.
16:17 towodo after that I'll prepare a plan for advancing the curator app to 'production' without requiring stephen to produce a new synthetic tree.
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17:12 hdliv are we having opentree call today/?
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18:07 jimallman hdliv: is your colleague now able to login to curation app?
18:07 jimallman (good to see you here, by the way!)
18:08 hdliv jimallman: hi, she was able to make edits but she is not added to opentree on github
18:09 jimallman opentree membership is not required, just a github account.
18:11 jimallman ah, i’m glad to see she didn’t need to add a proper name to her GH profile. i wonder what changed..?
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