Perl 6 - the future is here, just unevenly distributed

IRC log for #opentreeoflife, 2014-09-19

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All times shown according to UTC.

Time Nick Message
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02:32 josephwb hi francoism. i just pushed those error-checks. beware, as they touch a lot of files. might want to pull before doing anything substantial.
02:34 francoism ok, thanks for letting me know @josephwb!
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03:11 blackrim josephwb: how was soccer
03:11 josephwb blackrim: have you heard from anyone about the new tree? i haven't.
03:11 blackrim i haven't heard anything really. i will send an email in the morning just to say if no word, we move forward with it for pub
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03:24 josephwb don't know if you replied blackrim; i was dropped for a bit
03:27 blackrim aha, yeah, i said ...
03:27 blackrim i haven't heard anything really. i will send an email in the morning just to say if no word, we move forward with it for pub
03:33 josephwb sounds perfect. lets push forward with this. thanks.
03:33 blackrim yes. believe me. i want to just get it done
03:34 josephwb oh, you do? didn't glean that.
03:35 blackrim so my little personal linux laptop arrived this evening and is nice. i am much happier with my life now. no more macbook air
03:37 josephwb nice. we should probably do something with my desktop tomorrow. pretty busy, tho...
03:37 blackrim yeah. i have ubuntu on a usb key in my bag so we can try and boot with that and see if just umounting fixing things
03:38 josephwb great. i have a usb, but it is not reliable.
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11:22 josephwb Morning ilbot3!
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13:39 jeet_asserts jhill1: are you in the house?
13:40 jhill1 i am
13:40 jhill1 next door to you I suspect
13:40 jhill1 will pop by
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14:23 Topic for #opentreeoflife is now Open Tree Of Life | opentreeoflife.org | github.com/opentreeoflife | http://irclog.perlgeek.de/opentreeoflife/today
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14:32 towodo production system downtime a bit earlier this morning was me updating the treemachine db (synthetic tree).
14:33 towodo now updating production again to install a new treemachine plugin
14:33 towodo (i.e. treemachine api methods)
14:34 towodo funny, not so many hackathoners on irc this morning
14:41 josephwb those using graph/* or tree_of_life/* services should now use api, rather than devapi. thanks towodo
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14:42 towodo well hang on i haven’t done the deploy yet… checking disk space, wondering what I can delete.  I guess the previous version of the tax db
14:43 francoism thanks josephwb I updated rotl so everything uses api now
14:45 towodo ok. building treemachine on api.opentreeoflife.org now… done
14:45 josephwb ohoh, i already did that
14:45 josephwb francois
14:46 josephwb francoism
14:47 francoism josephwb oops! sorry about that... double checked everything looks good on github
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15:07 josephwb where are coffee be?
15:07 kcranstn downstairs in plaza room on 3rd floor
15:07 josephwb So, need $?
15:07 kcranstn no
15:08 josephwb oh, sweet. thanx
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15:36 jeetoriousity Hi mtholder
15:36 mtholder hello
15:36 jeetoriousity I am having problems with the following:
15:37 jeetoriousity curl -X POST http://devapi.opentreeoflife.org/v2/studies/find_trees -H "content-type:application/json" -d '{"property":"^ot:studyPublication","value":"http://dx.doi.org/10.1111/j.1365-294X.2012.05606.x"}'
15:38 jeetoriousity curl -X POST http://devapi.opentreeoflife.org/v2/studies/find_trees -H "content-type:application/json" -d '{"property":"ot:studyPublication","value":"http://dx.doi.org/10.1111/j.1365-294X.2012.05606.x"}'
15:38 jeetoriousity Both give me: "error" : "unrecognized property: ^ot:studyPublication"
15:38 jeetoriousity or ("error" : "unrecognized property: ot:studyPublication" in the second case)
15:38 mtholder without the ^ is correct
15:39 mtholder but this looks like an oti bug.
15:39 mtholder cody would be the person to talk to
15:39 jeetoriousity OK. But when extracting info from the results of find_studies(), the keys have '^'
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15:40 mtholder what do you mean " the results of find_studies()" which lib?
15:40 jeetoriousity codiferous: curl -X POST http://devapi.opentreeoflife.org/v2/studies/find_trees -H "content-type:application/json" -d '{"property":"ot:studyPublication","value":"http://dx.doi.org/10.1111/j.1365-294X.2012.05606.x"}'
15:40 mtholder what do you mean " the results of find_studies()" ? which lib is that func in?
15:40 jeetoriousity mtholder: the service at curl -X POST http://devapi.opentreeoflife.org/v2/studies/find_studies -H "content-type:application/json" -d '{"property":"ot:studyId","value":"pg_719","verbose":true}'
15:42 mtholder In the study NexSON?
15:42 jeetoriousity yes
15:42 mtholder ^ is a syntactic convention in the NexSON v1.2.1 for a meta of this element. If you request version 0.0.0 of NexSON you'll see that it is stripped
15:44 mtholder not sure why it fails without the ^ though. I thought there was a bug fix on this during this hackathon. Can't find the issue though...
15:44 mtholder codiferous^
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15:48 jeetoriousity Hi mtholder, it appears that (1) I am using a study property when I should be using a tree property and (2) studies/properties is return study property names for tree property names.
15:50 mtholder Could you put that as an issue in oti?
16:00 jeetoriousity mtholder I think Cody has already fixed it
16:01 mtholder as always, procrastination would have been a good strategy. In the long run we're all dead and the bugs that plague us are dead (to be replaced by new ones)
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16:03 jhill1 OT people. Is there a licence on your logo?
16:03 jhill1 (I used it in the STK GUI and need to redistribute the logo with the source)
16:04 mtholder I don't know. kcranstn^ logo question.
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19:17 mtholder and then there were only the open tree folks on IRC again...
19:17 mtholder +ilbot3 and scrollback, of course
19:17 kcranstn *yawn*
19:18 josephwb is a machine! (literally)
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