Perl 6 - the future is here, just unevenly distributed

IRC log for #opentreeoflife, 2014-10-30

| Channels | #opentreeoflife index | Today | | Search | Google Search | Plain-Text | summary

All times shown according to UTC.

Time Nick Message
02:47 ilbot3 joined #opentreeoflife
02:47 Topic for #opentreeoflife is now Open Tree Of Life | opentreeoflife.org | github.com/opentreeoflife | http://irclog.perlgeek.de/opentreeoflife/today
06:54 kcranstn joined #opentreeoflife
08:07 kcranstn joined #opentreeoflife
08:40 kcranstn joined #opentreeoflife
09:32 kcranstn joined #opentreeoflife
10:30 mtholder joined #opentreeoflife
12:58 towodo joined #opentreeoflife
13:04 towodo joined #opentreeoflife
13:11 towodo joined #opentreeoflife
13:18 towodo joined #opentreeoflife
14:32 pmidford2 joined #opentreeoflife
15:34 mtholder joined #opentreeoflife
16:42 pmidford2 joined #opentreeoflife
17:23 mtholder joined #opentreeoflife
18:04 towodo joined #opentreeoflife
18:06 towodo hullo!  PR review time
18:14 towodo jimallman, I’m doing a brief PR review
18:14 towodo https://github.com/OpenTreeOfLife/peyotl/pull/39  looks ok
18:14 jimallman i’m here! if you want a second pair of eyes (just finishing up a reply to pmidford)
18:15 towodo source looks fine and there is a test. I’m going to merge this one
18:15 towodo https://github.com/OpenTreeOfLife/phylesystem-api/pull/126
18:16 jimallman ok, here now
18:17 towodo merged
18:17 towodo There are only two other open PRs
18:18 towodo One in opentree, for stats, which I’m going to leave open
18:18 jimallman right, very much in progress
18:18 towodo One in reference-taxonomy … which I’m also going to leave open, since it doesn’t parse
18:18 towodo so we’re all done for this week.
18:18 jimallman hooray!
18:18 jimallman hope you’re having a good one
18:19 towodo I suppose I should deploy Mark’s changes, at least to ot10
18:19 towodo I’m having a terrible one… still slogging very slowly through the Dryad source code
18:20 towodo it’s horrible.  there are design docs, which is nice, but they’re very sketchy…
18:20 jimallman oh, sorry. i’ve had only peripheral involvement there, but dspace was pretty dense.
18:20 towodo internally the code has no comments to speak of…
18:20 towodo it uses java reflection meaning that errors aren’t caught at compile time…
18:21 towodo there are multiple copies of many classes so it’s very easy to look at the wrong one….
18:21 jimallman oh that makes me crazy
18:22 jimallman do you have an IDE that can keep track of that kind of thing?
18:22 towodo exception handlers drop essential contextual information when reporting problems…
18:22 towodo no, but I’m considering using eclipse
18:23 towodo has to run under X, since I have to do debugging on a VM…
18:25 jimallman i’ve heard good things about NetBeans and IntelliJ IDEA, but haven’t put in any real time with either
18:26 jimallman …and i don’t know whether either will run under X
18:26 travis-ci joined #opentreeoflife
18:26 travis-ci OpenTreeOfLife/phylesystem-api#647 (master - 898e4d1 : Jonathan A Rees): The build passed.
18:26 travis-ci Change view : https://github.com/OpenTreeOfLife/phylesystem-api/compare/622eb674dc61...898e4d15d7b2
18:26 travis-ci Build details : http://travis-ci.org/OpenTreeOfLife/phylesystem-api/builds/39521511
18:26 travis-ci left #opentreeoflife
18:26 towodo from where I stand all java IDEs are the same, since I know nothing about them, but I can look them up
18:28 towodo I’ve always used emacs + make with java, and it’s worked pretty well
18:28 towodo but not with this multiple-classes-with-same-name business
18:36 mtholder joined #opentreeoflife
18:36 jimallman i’m sure there’s an emacs solution for this level of Java-smarts, the trick is to find it.
18:50 towodo emacs talks jdb at least. i should try that.
18:51 towodo i tend to use jython and jscheme as debuggers… that approach doesn’t work so well with dryad
18:51 towodo pmidform2, did you get the doc pointer?
18:52 towodo pmidford2 ^
18:52 towodo I’m trying to work out the silva/ncbi synthesis, will rephrase using DCC-5 ideas
19:16 pmidford2 Yes,
20:11 mtholder joined #opentreeoflife
20:31 pmidford2 left #opentreeoflife
22:11 pmidford2 joined #opentreeoflife
22:14 pmidford2 joined #opentreeoflife
22:26 pmidford2 left #opentreeoflife
23:30 towodo joined #opentreeoflife
23:48 towodo joined #opentreeoflife

| Channels | #opentreeoflife index | Today | | Search | Google Search | Plain-Text | summary