Perl 6 - the future is here, just unevenly distributed

IRC log for #opentreeoflife, 2015-03-12

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All times shown according to UTC.

Time Nick Message
12:33 jar286 joined #opentreeoflife
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18:01 jar286 joined #opentreeoflife
18:02 jar286 let’s see…
18:03 jimallman https://github.com/pulls?user=OpenTreeOfLife
18:03 jar286 nothing new
18:03 jimallman nothing new in stats
18:04 jimallman i’m hoping Karen has had a chance to review the tree properties
18:04 jar286 inclusion tests pass in taxonomy
18:04 jar286 karen won’t be here today
18:04 jimallman ok.
18:04 jimallman any news from kfoney on #77?
18:05 pmidford2 jimallman - did you ever take a look at the stats history I added?
18:05 jar286 I’ve emailed kfoney twice, no word
18:05 jimallman pmidford2: i think so, but no progress integrating this (sorry)
18:06 pmidford2 jimallman - ok, just let me know if there are things that should be changed.
18:06 jimallman will do, thanks
18:08 jimallman pmidford2: will the new/changed nexson properties in #598 affect your work in #127?
18:09 pmidford2 jimallan - good question, I'll take a look at that code - I suspect yes
18:10 pmidford2 jimallman - #127 shouldn't hold up #598 though - phylografter support isn't a very high priority these days
18:12 jimallman understood. the new tree properties are not yet set in stone, still under review. and we need to discuss whether/how to alter the existing nexson in phylesystem.
18:13 pmidford2 And I have been remiss in giving them more than a cursory review
18:13 pmidford2 *not* giving
18:14 jimallman the changes are fairly simple (REMOVE ot:curatedType, ADD ot:treeType, ot:treeDescription, ot:inferenceMethods), but there’s some logic for capturing and transferring values from curatedType to the other fields.
18:15 jimallman jar286: i assume you saw the email from snacktavish? she’s interested in cleaning up duplicate studies, but we haven’t deployed the comment-on-delete changes yet.
18:15 jar286 right.  we could deploy I suppose
18:16 jar286 what needs to be deployed?
18:16 pmidford2 Yes, it would be useful to replicate (at least part of) that logic in phylografter (when it happens)
18:17 jimallman jar286: comment-on-delete needs opentree, phylesystem-api, and (iirc) peyotl…
18:17 * jimallman is confirming that now...
18:17 jar286 ok… well deployment was easy last time we did it, so let’s try it again today
18:18 jimallman yes, all three of those repos
18:20 jar286 Romina is busy curating, I’ll warn her
18:21 jar286 Looks like @snacktavish has already deleted pg_418
18:22 jimallman i think she was expecting the commit-msg UI, so it might have surprised her by Just Working.
18:24 jimallman jar286: would you like me to put up the maintenance message for curation? or are you planning to deploy now/soon?
18:24 jar286 I was going to do it at 3:30 as usual
18:25 jimallman ok. i can put up the message at 3pm
18:25 jar286 I sent email to romina, who’s the only one who’s active now
18:26 jimallman ok
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19:33 jar286 redeploying now (Romina acked my warning)
19:34 jar286 api…
19:38 jar286 smoke tests pass
19:38 jar286 tree…
19:41 jar286 smoke tests pass (haven’t tested delete)
19:59 jimallman i’m also seeing expected behavior in tree-view and curation app (no delete yet)
20:00 jimallman do we have a likely candidate for deletion?
20:00 jimallman or maybe we can ask Romina to try some of her targets..?
20:00 jimallman jar286: ^
20:01 jar286 I emailed Emily re deletion (she was asking, right?)
20:01 jar286 when do you mean about Romina?
20:01 jar286 what
20:02 jimallman s/Romina/Emily, sorry
20:03 jar286 I expect she will test in her own time
20:03 jar286 it all worked on dev so I’m not too worried about it…
20:03 jimallman agreed
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