Perl 6 - the future is here, just unevenly distributed

IRC log for #opentreeoflife, 2015-07-07

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All times shown according to UTC.

Time Nick Message
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14:04 kcranstn hey jimallman
14:05 jimallman hi kcranstn!
14:05 kcranstn let’s chat collections UI
14:05 jimallman fyi - i’ll be touch and go this week, kind of a working vacation at the beach
14:05 kcranstn nice!
14:05 kcranstn which beach?
14:06 jimallman but yes, collections!
14:06 jimallman emerald isle
14:06 kcranstn watch out for sharks
14:06 jimallman yeah, lots of non-swimming fun going on here
14:06 jimallman only the surfers are in the water
14:07 jimallman apparently the bigger hazard is taking photos on the balcony
14:07 kcranstn collections: what’s the balance of decisions to be made vs just work to be done
14:07 kcranstn please come back from the beach, k?
14:08 jimallman i think we have a pretty clear direction at this point. i can put together a simple roadmap.
14:08 jimallman one option is to do some work in parallel, by constructing key collections (inputs to synthesis) by hand.
14:08 jimallman that would also give us some data to prove out the UI
14:09 jimallman i just need to add an optional property for each tree’s commit SHA.
14:09 jimallman (where i’m assuming default behavior is “use the latest version”)
14:10 kcranstn sounds good
14:10 kcranstn are there issues?
14:10 kcranstn github issues
14:11 jimallman hm, let’s see...
14:12 jimallman yes, there’s a ‘collections’ label there:   https://github.com/opentreeoflife/opentree/issues?q=is%3Aopen+is%3Aissue+label%3Acollections
14:12 jimallman i’ll add some more and bring this up to date
14:13 jimallman but now i must go on a grocery run. can we talk this afternoon?
14:13 kcranstn sure thing
14:13 kcranstn no sharks
14:14 jimallman yea! thanks. no sharks, guaranteed (unless my car goes off a bridge)
14:15 jimallman fyi, my thoughts (and questions) on commit SHA and “fast-forwarding” trees are here: https://github.com/OpenTreeOfLife/opentree/issues/616#issuecomment-75583709
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16:26 kcranstn jar286?
16:26 jar286 hello
16:27 kcranstn just shared a duke box folder with you for assembling the dryad deposit for the pnas paper
16:27 jar286 ohh… what fun
16:27 kcranstn now, now
16:28 kcranstn we’ll have to pay for the dryad submission because pnas is not integrated :(
16:28 jar286 a bargain at any price
16:29 jar286 I haven’t been keeping track… do you have an inventory of what goes where?
16:29 kcranstn taxonomy + processed tree files + subproblems + synthetic tree
16:29 kcranstn anything else?
16:30 jar286 any metadata needed to tie it all together?
16:31 jar286 e.g. do processed tree files have DOIs
16:31 kcranstn how would they have been assigned DOIs?
16:32 jar286 no, I mean the DOIs of the articles they derived from… there is a path from the literature to the processed trees, would someone know how to follow it.
16:32 jar286 OTU mappings?
16:33 kcranstn yes, probably OTU mappings
16:34 kcranstn and I do plan to include the supplementary table with the list of input trees
16:35 jar286 good
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18:52 kcranstn it doesn’t feel like this list of issues is complete: https://github.com/opentreeoflife/opentree/issues?q=is%3Aopen+is%3Aissue+label%3Acollections
18:52 kcranstn i.e. I assume there are other things to do before this is live
18:53 kcranstn “this” = collections
19:13 jimallman agreed, i’ll add some more steps
19:29 kcranstn let me know how I can help!
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