Perl 6 - the future is here, just unevenly distributed

IRC log for #opentreeoflife, 2015-08-11

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All times shown according to UTC.

Time Nick Message
01:33 kcranstn joined #opentreeoflife
13:30 kcranstn joined #opentreeoflife
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15:31 jar286 joined #opentreeoflife
15:54 josephwb hey jimallman
15:55 jimallman hi josephwb
15:55 josephwb when I upload a new tree, it automatically checks *all* trees as preferred
15:55 jimallman ! that’s odd.
15:56 jimallman i’ll try to reproduce. have you made an issue for this?
15:58 josephwb not yet
15:59 josephwb i am ot_310
16:00 josephwb added a dummy tree, and did the thing
16:00 josephwb want me to file an issue?
16:01 jimallman please, just a simple one so we can keep track.
16:01 josephwb ok
16:01 jimallman if it’s an easy fix i can get it in before tomorrow’s PR review
16:04 josephwb hmm. didn't do it on my linux machine...
16:05 josephwb and now it won't do it at all!
16:06 josephwb i guess that is good. but it did it consistently ~5 times
16:06 jimallman i’m not sure how it could happen, given the logic involved. can you repeat it for ot_310? maybe back out the latest tree and reset all preferred flags?
16:07 jimallman fyi, i see just one preferred tree here (but i’m guessing you reset the others): https://tree.opentreeoflife.org/curator/study/view/ot_310/?tab=trees
16:12 josephwb yeah, i reset things. doing a new study now, so i'll see what happens
16:17 jimallman thanks
16:20 jimallman jar286: congrats on slaying the dragon (#43)! sorry to hear it was such an ordeal.
16:26 josephwb jimallman: the second study went fine
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17:16 josephwb hey jimallman
17:17 josephwb i have the files for this issue: https://github.com/OpenTreeOfLife/opentree/issues/663
17:17 josephwb where should i put them?
17:17 jimallman files? the input tree, you mean?
17:17 josephwb the ranked list of studies
17:17 jimallman ah, i see.
17:18 jimallman what format is your file? if it’s pure data (not in a friendly display format), i guess Google Docs would be good.
17:19 josephwb text
17:19 josephwb python lists, really.
17:19 jimallman gotcha. i’m working out the final features for the tree-collection UI, so we should be able to edit with the GUI very soon. If it’s a ton of trees, maybe it’s worth whipping up a quick python script to do the job.
17:20 jimallman let’s have a look at the data. we’ll need to decide what to include for name and description for these.
17:20 josephwb ok. i'll leave a note on the issue that i (think I) have the data
17:20 jimallman awesome, thanks!
17:22 josephwb done
17:45 jimallman lots of trees and studies here… i’ll definitely cook up a script to roll the JSON, then we can edit in the UI.
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19:56 josephwb jar286: https://github.com/OpenTreeOfLife/treemachine/issues/183#issuecomment-130044752
20:04 jar286 replied
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